Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01415 ATGTCTTTCTTTTCTACTCTTCGTCGATCCTCCGTCTTCATCCAACGCTTCACAACCTCGACAACTCCACCATCTTCTTCCTCCCCTGCACCATCCTTACCGAACTCCATCCCACCGCGACATCCAAACTGGATTTCAGCCTTTGCTTTTGCCTCTTCTTTATCTCTTCTCTATTACTTCTCCAAACACAATTCACATTTCGACTCTGATTTCTTAAACAATGCTTTTACAAAACTATCATTTTCCGAGAGTTCCAATAATCACTTGCTTTTTGGAGATGCATACAGAAGTAAAGTTTTCTTTAACTATGAGAAGCGCATAAGGCTGCATAGTCCACCAGAAAAAGTTTTCGAATACTTTGCATCTTCTCGTACACCAGAGGGAGAAGTTCTTATGAATCCTGCAGATTTAATGCGTGCGGTTGTTCCAGTTTTCCCTCCGTCTGAATCAAATCTTGTTAGAGATGGATCTTTGAAAGGTGAAAGAAGTCCTGGCCACTTGTTATGTCCTCCTTCAGAATTTTTTATGCTTTTCGATGTAAACGGTGATGGTCTTATATCATTCAGGGAGTATTTATTCTTGGTAACACTGCTTAGCATCCCAGAATCGAGCTTTTCTGCAGTATTCAAAATGTTTGACATGGATAATGATGGGGAGATAGATAGAGAAGAATTCAAAAGAGTGGTGGCATCAATGCGATCTCATAGCAGGCATGGTGTTCATCGAAGGGATATAGAGGCTGATGCCTCTGTAGAAAATGGAAGGATGGTGGAATACTTATTTGGTAAAGAAGGAAAAGGTCGCCTTGGACATGATAAATTTGTGCAATTTATAAGAGATTTGCATGATGAAATTTTGAGGCTGGAGTTTGTTCATTATGATTTCAAATCGCGAAAAGCCATATCAGCAAAGGATTTTGCACACTCCATAGTTGCTTCAGCAGACGTGTATCATCTGAGCAAATTACTCGAAAGGGTTGATGAAATGAACAATAATCCGCAGTTCAATAATGTGCGCATAACATTTGACGAGTTTAAAAACTTTGCTGAACTACGGAAAAAATTAGTACCACTTTCATTGGCTCTTTTCAGTTTTGCAAAAGTAAATGGTCTTTTAACAAGAGACGATTTTCAACGAGCTGCATCGAGTGTTTGCGGTTTATCTCTTTCTGAGAATGTGGTGGAGATTGTTTTCCATTTGTTTGACACAAGTGGGGATGGAGATCTAAGTTCAAATGAGTTTATTAGAGTGCTGCACAAAAGAGAGGGAGATGTTGGTGGACATGTAGAGACAGGAGTCATGGGTTTCTTGTCATGTTGCTGGAACTGTATGGACAAATCTCCAGGTTCACAGTCATTTTACTGA 1365 0.3978 MSFFSTLRRSSVFIQRFTTSTTPPSSSSPAPSLPNSIPPRHPNWISAFAFASSLSLLYYFSKHNSHFDSDFLNNAFTKLSFSESSNNHLLFGDAYRSKVFFNYEKRIRLHSPPEKVFEYFASSRTPEGEVLMNPADLMRAVVPVFPPSESNLVRDGSLKGERSPGHLLCPPSEFFMLFDVNGDGLISFREYLFLVTLLSIPESSFSAVFKMFDMDNDGEIDREEFKRVVASMRSHSRHGVHRRDIEADASVENGRMVEYLFGKEGKGRLGHDKFVQFIRDLHDEILRLEFVHYDFKSRKAISAKDFAHSIVASADVYHLSKLLERVDEMNNNPQFNNVRITFDEFKNFAELRKKLVPLSLALFSFAKVNGLLTRDDFQRAASSVCGLSLSENVVEIVFHLFDTSGDGDLSSNEFIRVLHKREGDVGGHVETGVMGFLSCCWNCMDKSPGSQSFY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01415 454 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Vivi3g01415 454 ProSiteProfiles EF-hand calcium-binding domain profile. 200 235 IPR002048 GO:0005509
Vivi3g01415 454 CDD EFh 173 230 IPR002048 GO:0005509
Vivi3g01415 454 SUPERFAMILY EF-hand 286 421 IPR011992 -
Vivi3g01415 454 CDD EFh_MICU 205 421 - -
Vivi3g01415 454 SUPERFAMILY EF-hand 173 279 IPR011992 -
Vivi3g01415 454 SMART efh_1 170 198 IPR002048 GO:0005509
Vivi3g01415 454 SMART efh_1 393 421 IPR002048 GO:0005509
Vivi3g01415 454 SMART efh_1 204 232 IPR002048 GO:0005509
Vivi3g01415 454 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 24 446 IPR039800 GO:0005509|GO:0006851
Vivi3g01415 454 Gene3D - 112 279 - -
Vivi3g01415 454 Gene3D - 284 425 - -
Vivi3g01415 454 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Vivi3g01415 454 Pfam EF hand 207 229 IPR002048 GO:0005509
Vivi3g01415 454 Pfam EF hand 174 191 IPR002048 GO:0005509
Vivi3g01415 454 ProSitePatterns EF-hand calcium-binding domain. 213 225 IPR018247 -
Vivi3g01415 454 Pfam EF-hand domain pair 370 419 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01415 Vivi-Chr3 22989164 22991458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01415 43 386 EF-hand Containing Proteins AT4G32060 56.000 2.37e-140 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01415 K22827 - gmx:100786375 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01415 3 22989164 22991458 Vivi3g01415 3 22989164 22991458 ECH
Vivi4g05123 4 182394447 182398920 Vivi3g01415 3 22989164 22991458 PCT