Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05111 ATGGCTTTCAACAAGCATAGTGCACTCATTATATTGCTTTCTCTTCTTTCTTATTCCATATTTTCACATGCATGTGAAACATGCAATCCCAAACCTAAACCTAGTCCTCCACCACCTTCCAAAAATCCTACGCCTTGTCCTCCACCACCTTCAACAACACCTAAGGCTACTCCTCCACCTAAGGCAAGTACTCCACCTCCTTCAACTACACCTACAGCTAGTCCTCCTACTCCTTCAACATCACAAAAATGTCCTAAGGACACATTAAAGCTAGGTGTTTGTACTGATCTTCTTGGACTTGTTAATGTTGTGGTTGGAAGTCCTGCTTCAAGCAAGTGTTGTACATTGATTCAAGGTTTGGCTGATTTGGATGCAGCAATATGCCTTTGTACTGCTATTAAGGCAAATGTTCTTGGTATCAACTTGAATGTTCCTGTCACACTCAGTCTCTTACTTAGTGCTTGTCAAAAATCTCTTCCTTCTGGTTTCCAGTGCTCTTAG 501 0.4172 MAFNKHSALIILLSLLSYSIFSHACETCNPKPKPSPPPPSKNPTPCPPPPSTTPKATPPPKASTPPPSTTPTASPPTPSTSQKCPKDTLKLGVCTDLLGLVNVVVGSPASSKCCTLIQGLADLDAAICLCTAIKANVLGINLNVPVTLSLLLSACQKSLPSGFQCS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05111 166 PRINTS Proline rich extensin signature 38 59 - -
Vivi4g05111 166 PRINTS Proline rich extensin signature 60 76 - -
Vivi4g05111 166 PRINTS Proline rich extensin signature 23 35 - -
Vivi4g05111 166 SMART aai_6 84 165 IPR016140 -
Vivi4g05111 166 MobiDBLite consensus disorder prediction 31 84 - -
Vivi4g05111 166 Gene3D - 81 166 IPR036312 -
Vivi4g05111 166 Pfam Hydrophobic seed protein 84 166 IPR027923 -
Vivi4g05111 166 FunFam pEARLI1-like lipid transfer protein 1 82 166 - -
Vivi4g05111 166 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 87 165 IPR036312 -
Vivi4g05111 166 MobiDBLite consensus disorder prediction 31 74 - -
Vivi4g05111 166 CDD HPS_like 82 165 IPR027923 -
Vivi4g05111 166 PANTHER - 6 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05111 Vivi-Chr4 182179696 182180616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05111 74 165 Acyl Lipid Metabolism Gene Families AT4G22490 38.947 1.79e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05111 - - psat:127093352 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05111 4 182179696 182180616 Vivi4g05111 4 182179696 182180616 ECH
Vivi4g05111 4 182179696 182180616 Vivi3g01401 3 22825548 22826411 PCT