Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01401 ATGGCTTTCAAAAAATGCACTTCCATAATTTTAATGCTTTCTCTTCTTTCTTACTCAACATTCTCTGATGCTAGTGGTTGTTCATCTTCTCCAAACCCAACACCTTGTTCTACTCCTCCACCATCACCAAGCCCAACACATCCACCTTCTACTCCTCCACCATCACCAAGCCCAACACATCCGCCTTCTGCTACTCCACCTTCATCCAAAGGGAAATGCCCCATTGACACCTTAAAGTTAGGGGTCTGTGCTAATGTTTTAGGATTAATTAATATCGGAAGTCCTCTTTCGGGTAGTAAATGTTGTGCTTTAATCGATGGGTTGGTTGACTTGGAAGCTGCGGTTTGTCTTTGTCTCGCACTTAAGGCAAATGTGCTTGGAATCAACTTAAACATACCTCTCGACCTCAACTTGATCATTAGTGCTTGTCAAAAAACTCTTCCTCCTAAATTTAAATGTGCTTAA 465 0.4172 MAFKKCTSIILMLSLLSYSTFSDASGCSSSPNPTPCSTPPPSPSPTHPPSTPPPSPSPTHPPSATPPSSKGKCPIDTLKLGVCANVLGLINIGSPLSGSKCCALIDGLVDLEAAVCLCLALKANVLGINLNIPLDLNLIISACQKTLPPKFKCA 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01401 154 Pfam Hydrophobic seed protein 73 154 IPR027923 -
Vivi3g01401 154 Gene3D - 72 154 IPR036312 -
Vivi3g01401 154 MobiDBLite consensus disorder prediction 33 68 - -
Vivi3g01401 154 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 75 153 IPR036312 -
Vivi3g01401 154 PANTHER - 5 153 - -
Vivi3g01401 154 CDD HPS_like 71 153 IPR027923 -
Vivi3g01401 154 SMART aai_6 73 153 IPR016140 -
Vivi3g01401 154 MobiDBLite consensus disorder prediction 26 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01401 Vivi-Chr3 22825548 22826411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01401 63 153 Acyl Lipid Metabolism Gene Families AT4G22490 37.895 2.33e-13 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01401 - - gmx:547594 130.568
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01401 3 22825548 22826411 Vivi3g01401 3 22825548 22826411 ECH
Vivi4g05111 4 182179696 182180616 Vivi3g01401 3 22825548 22826411 PCT