Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05101 ATGGCGGAAACTGGTTTATCGCTGATGGATCCCAACGCGAAGAAGAAGAAAAAAACCGTGCAGTTTTCTTCTTCTTCTTCTCCTTCTCCACTTGCAATTTTTTCGAGAAAAAGTTTGTTTTATGATAGGCTTCCTTCACTGCCTTTGAGACTCTCTGTTCTCAAATTAGACGGTTCTTCGTTCGATATTCAGGTTTCGAAGAATGCGACTATTGCGGAGCTTAAGGATTCAGTGGAAGCTGTTTTTAGTTATATGCCTCAGAATGGTCCGGGCAAAATTTCATGGCCACATGTTTGGGGACAGTTTTGTTTATGCTATGATGGACATAAGCTAGTTAAGGAGGAGGATTATCTTAGAAACTATGGTGTCAAGGATGGTGACCAGCTCAATTTCATCCGCCACACATCAAATAATTTCGGTGTTCAAAGAAAGCGATCAAAGAAAAGAGTTTTCCATTTGAAACAACACAGGAGGTCACAAGTGAATTACTGCAAACAGAAAGAAAATAGCGGCGACGATGACGACGACGATGACGATATTAGTTCAGATGAGAATGCAAAGGTCAAGGATCACACTAAAGAAGTGCATGTTGCAAAGAACAAGATAACTGGCTTTATGGGATTTGTTATCCACACCACTAGCAATTGTGAGAAAAACAAAAACTCAAAACCAGATCTTCCCATCGACAATTTCCAGGTGTTTGCTTGGCAGTTTCAGGAAGATCAGAAGGATTGTTTGTTTCGGAAAGAGACAGCAATATTCTATTTGGAAACGGTACTAACAATATTTAGGTGCGGTATAGATCCAATTGACATCCTTGATTTGGATGCTACAATTGAACCCATATCAGTTTGGTTGTTGTGTATAGAAATTCTGGTTCTATTTGCCCGTATTGGAAAATTCTTGGATAAATTTTTTTAA 921 0.3909 MAETGLSLMDPNAKKKKKTVQFSSSSSPSPLAIFSRKSLFYDRLPSLPLRLSVLKLDGSSFDIQVSKNATIAELKDSVEAVFSYMPQNGPGKISWPHVWGQFCLCYDGHKLVKEEDYLRNYGVKDGDQLNFIRHTSNNFGVQRKRSKKRVFHLKQHRRSQVNYCKQKENSGDDDDDDDDISSDENAKVKDHTKEVHVAKNKITGFMGXFVIHTTSNCEKNKNSKPDLPIDNFQVFAWQFQEDQKDCLFRKETAIFYLETVLTIFRCGIDPIDILDLDATIEPISVWLLCIEILVLFARIGKFLDKFF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05101 307 CDD Ubl_SNRNP25 49 134 IPR040610 -
Vivi4g05101 307 SUPERFAMILY Ubiquitin-like 47 138 IPR029071 -
Vivi4g05101 307 Gene3D - 46 141 - -
Vivi4g05101 307 Pfam Ubiquitin-like domain 49 134 IPR040610 -
Vivi4g05101 307 MobiDBLite consensus disorder prediction 162 186 - -
Vivi4g05101 307 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 25 216 IPR039690 GO:0000398|GO:0005689
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05101 Vivi-Chr4 182082352 182086603 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05101 - - vvo:131596274 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05101 4 182082352 182086603 Vivi4g05101 4 182082352 182086603 ECH
Vivi3g01353 3 22065815 22068535 Vivi4g05101 4 182082352 182086603 ECH
Vivi4g05101 4 182082352 182086603 Vivi3g01353 3 22065815 22068535 PCT