Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01353 ATGAACGAACCAATCGTATCCAACGAGAGCCCTCGGCGATCTCTCACCGTTCAACTTTCTTCCCTGATGATCGTCGATGACAGTTTATCCTACGGCAAACTTCCTTCCCAGAACCTCACCCTCTCCGTCCTCAAACTCGATTCATCGTCATTCCAAGTTGAAGTTGCTAAAACCGCAACTGTTGCAGAACTCAAGGATGCGGTAGAGGCGGTTTTTAGACCGGAGAAAATATCCTGGCCACTTGTTTGGGGGCAATTTTGTTTATGCTATGATGCACAGAAGTTAGTTACAGAAACGGATTATCTTAGAGATTATGGTATCAAGGACGGTGATCAGCTTCAGTTTGTTCGCCATATATCCAATGTCTGTAGTATTCAAAGGAAACCGAAGAAACGAACTGTCAATTTGAACCAACATGGGAGATCATCGTCCCAAGTGAATAGATACCAACAGAAAGAAAATGTTGATGCAAACAACATCAGTTTAGATAGTATAGTCATAGAGAATGGGAAGGTTCAGAATTGCAACGCAGAAGAAAATCGCGTTGGAATGGGAAAGTTAACTGGATATTTGGGAGGTATGTTCTCAGAGGCCAGGATGGCTGTTGTGAGAAGAGCTAGAATGGAAGGTGGGATTTCCAGAGGCATAGCAAGTAGTTTTAGGAAGGTTAAGGGGATTGTAGGTCAATGCAGAAAGCCACATAAAAGAAACACATGGAAAGAGTTTTCAAGTTGA 735 0.4286 MNEPIVSNESPRRSLTVQLSSLMIVDDSLSYGKLPSQNLTLSVLKLDSSSFQVEVAKTATVAELKDAVEAVFRPEKISWPLVWGQFCLCYDAQKLVTETDYLRDYGIKDGDQLQFVRHISNVCSIQRKPKKRTVNLNQHGRSSSQVNRYQQKENVDANNISLDSIVIENGKVQNCNAEENRVGMGKLTGYLGGMFSEARMAVVRRARMEGGISRGIASSFRKVKGIVGQCRKPHKRNTWKEFSS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01353 244 SUPERFAMILY Ubiquitin-like 35 119 IPR029071 -
Vivi3g01353 244 SMART ubq_7 39 118 IPR000626 GO:0005515
Vivi3g01353 244 ProSiteProfiles Ubiquitin domain profile. 39 116 IPR000626 GO:0005515
Vivi3g01353 244 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 18 228 IPR039690 GO:0000398|GO:0005689
Vivi3g01353 244 Gene3D - 33 125 - -
Vivi3g01353 244 CDD Ubl_SNRNP25 39 118 IPR040610 -
Vivi3g01353 244 Pfam Ubiquitin-like domain 39 119 IPR040610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01353 Vivi-Chr3 22065815 22068535 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01353 - - tpra:123898522 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01353 3 22065815 22068535 Vivi3g01353 3 22065815 22068535 ECH
Vivi3g01353 3 22065815 22068535 Vivi4g05101 4 182082352 182086603 ECH
Vivi4g05101 4 182082352 182086603 Vivi3g01353 3 22065815 22068535 PCT