Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05078 ATGGGTCGGAAAGGAATCAGCAAAAGCAATCTCTTTGATGATAAAAGAGATGGTTTTTTCTCAATCTCCAATCTAGGGTCACAGTGGGGTGATATTGGTCTTTCTCAGTCTCAGGAACAAGGTTGTTATCCCGTTGGTGGTTTATTTGCAAGCATGAGTCAAATGGGAATGGGGTTTGGTGGAGTTCCACAGCCAAAATCACCATCTTCTGAAAACTCATCTTCTCAACGAAACAATGGGATGAAGATTCCCTGCACTGAGCTGTACGTTAGGTATGTGCAATCAGAAGGGAAAGTGAAGATTCTCGGTGTTCCTGATGAGGAGGAAGATGAAATAGTGGAGGGTGTTGAGAGGAAGAAAAAGGGTGGTGTTAAGAAGTTTAAGGTTAAGGTGAAAAACCCTTCTTTGAGGAAGCTGATTAGTGGTGCTTTTGCTGGGGCTGTTTCAAGGACTGCTGTTGCGCCTTTGGAGACTATTAGGACTCATTTGATGGTTGGGAGTAGTGGGAATTCGAGTGGTGAGGTGTTTAATAATATCATGAATACTGATGGATGGAAAGGGTTGTTTAGGGGGAATCTTGTTAATGTTATAAGAGTTGCACCTAGCAAGGCTATTGAGCTATTTGCTTATGATACCGTTAACAAGAACCTTTCATCAAAGCCGGGTGAAAAGCCGAAACTCCCCATTCCTGCATCACTGATAGCAGGCGCATGTGCTGGAGTTAGTTCAACCATTTGCACATATCCTCTCGAATTACTCAAGACTAGATTAACTGTCCAGAGAGATGTCTACAACGGTCTACTGGACGCGTTTGTGAAAATAATTCGAGAGGAAGGTGCTTCCGAACTCTACAGAGGCCTTGCTCCTAGTCTCATCGGAGTCATTCCGTATTCTGCCACCAATTACTTTGCTTACGACACTTTGAGAAAAGTGTACAAGAAAGTTTTCAAGCAAGAGAAGATCGGAAACATTGAGACCCTTTTGATAGGTTCTGCAGCTGGTGCTATTTCGAGTAGCGCTACTTTCCCGCTTGAAGTGGCTCGCAAGCAAATGCAAGTCGGAGCACTGAGTGGAAGACAGGTTTACAAGAACGTGATTCACGCGCTCGCATGCATACTTGAGAAAGAAGGTATCCAAGGTTTGTATAGAGGATTAGGACCGAGCTGCATGAAGTTGGTTCCAGCAGCGGGAATCTCTTTCATGTGCTATGAAGCATGCAAGAGGATATTGGTAGAGGAAGAAGACGAAGAATAG 1254 0.441 MGRKGISKSNLFDDKRDGFFSISNLGSQWGDIGLSQSQEQGCYPVGGLFASMSQMGMGFGGVPQPKSPSSENSSSQRNNGMKIPCTELYVRYVQSEGKVKILGVPDEEEDEIVEGVERKKKGGVKKFKVKVKNPSLRKLISGAFAGAVSRTAVAPLETIRTHLMVGSSGNSSGEVFNNIMNTDGWKGLFRGNLVNVIRVAPSKAIELFAYDTVNKNLSSKPGEKPKLPIPASLIAGACAGVSSTICTYPLELLKTRLTVQRDVYNGLLDAFVKIIREEGASELYRGLAPSLIGVIPYSATNYFAYDTLRKVYKKVFKQEKIGNIETLLIGSAAGAISSSATFPLEVARKQMQVGALSGRQVYKNVIHALACILEKEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKRILVEEEDEE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05078 417 MobiDBLite consensus disorder prediction 65 80 - -
Vivi4g05078 417 ProSiteProfiles Solute carrier (Solcar) repeat profile. 321 409 IPR018108 -
Vivi4g05078 417 ProSiteProfiles Solute carrier (Solcar) repeat profile. 227 311 IPR018108 -
Vivi4g05078 417 MobiDBLite consensus disorder prediction 59 80 - -
Vivi4g05078 417 PRINTS Mitochondrial carrier protein signature 284 302 IPR002067 GO:0055085
Vivi4g05078 417 PRINTS Mitochondrial carrier protein signature 151 165 IPR002067 GO:0055085
Vivi4g05078 417 PRINTS Mitochondrial carrier protein signature 242 260 IPR002067 GO:0055085
Vivi4g05078 417 PRINTS Mitochondrial carrier protein signature 330 352 IPR002067 GO:0055085
Vivi4g05078 417 PRINTS Mitochondrial carrier protein signature 191 211 IPR002067 GO:0055085
Vivi4g05078 417 PRINTS Mitochondrial carrier protein signature 138 151 IPR002067 GO:0055085
Vivi4g05078 417 SUPERFAMILY Mitochondrial carrier 134 405 IPR023395 -
Vivi4g05078 417 PANTHER SOLUTE CARRIER FAMILY 25 128 410 - -
Vivi4g05078 417 Pfam Mitochondrial carrier protein 134 218 IPR018108 -
Vivi4g05078 417 Pfam Mitochondrial carrier protein 227 314 IPR018108 -
Vivi4g05078 417 Pfam Mitochondrial carrier protein 321 412 IPR018108 -
Vivi4g05078 417 Gene3D Mitochondrial carrier domain 129 415 IPR023395 -
Vivi4g05078 417 ProSiteProfiles Solute carrier (Solcar) repeat profile. 133 216 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05078 Vivi-Chr4 181738118 181741544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05078 320 417 Organic Solute Cotransporters AT4G32400 29.412 5.50e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05078 K14684 - gmx:100816041 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05078 4 181738118 181741544 Vivi4g05078 4 181738118 181741544 ECH
Vivi4g05078 4 181738118 181741544 Vivi3g01323 3 21621255 21624194 PCT