Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01323 ATGGGTAGGAACAAAATCCAACTTTCTCATAGTAAAACAGATGGGTTTTTCTCACTTTCTCATGAAGACTACTCTTATCCTGGAGGTTTGTTTGCTAGTGTTGGCCAAATGGGTATAGGGTTTGGTGTTCCACAACCCAATCCTTCTGATTCAAATCAAACTGGTGATGACCCTAAACTTCCTTTCAATGAGTTATATGTAAAGTATATTCAATCACTATGGAAATTTGAGGCTAATGGAGTTAAGGTGAAGGGTGAAGAAGGTGTTAAGGCCAAGAATAAAAATGGTGGGTTTAAGCTCAAGATTAAGATTAGGAATCCTTCAATTAGAAGGCTGTGTAGTGGAGCAATTGCGGGGGCAATCTCTCGAACAACTGTGGCGCCATTGGAGACTATTAGGACTCATTTGATGGTTGGGAGTAGTGGTCATTCTAGCACTGAGGTTTTCAATGATATTATGAAAACAGATGGATGGAAGGGTTTGTTTAGGGGTAATCTAGTTAATGTCATTCGTGTTGCGCCTAGCAAGGCCATTGAGCTATTTGCTTATGATACGGTAAACAAGAACCTATCCACAAAGCCCGGGGAGCAGTCCAAACACCCGGTTCCTGCATCGTTGATTGCAGGTGCCTGTGCTGGAGTGAGTTCAACTATATGCACATATCCGCTTGAACTACTCAAGACTAGACTAACTATTCAGAGAGGTGTTTATAATGGTCTCCTTGACGCATTCGTGAAAATAATTAAAGAAGAAGGTCCTGGAGAACTATACAGAGGCCTTACTCCTAGTCTAATCGGTGTTATTCCATATTCGGCTACCAATTACTTTGCCTACGACACACTACGCAAAGCATACCGAAAATTCTTCAAACAAGAGAAGATTGGCAACATTGAAACCCTTTTGATTGGCTCAGCAGCAGGTGCTATTTCAAGTACCGCGACTTTTCCACTCGAGGTGGCTCGCAAGCAAATGCAAGTTGGAGCACTTAATGGAAGACAGGTTTACAAGGATGTGCTTCATGCACTTGTTAGCATACTAGAAAAAGAAGGGATTCAGGGTCTATATAGAGGGCTTGGACCTAGTTGCATGAAGTTAGTGCCAGCCGCGGGAATCTCTTTCATGTGTTACGAAGCATGCAAGAAGATACTTATAGATGATGACCAGGAGGAATAG 1173 0.4228 MGRNKIQLSHSKTDGFFSLSHEDYSYPGGLFASVGQMGIGFGVPQPNPSDSNQTGDDPKLPFNELYVKYIQSLWKFEANGVKVKGEEGVKAKNKNGGFKLKIKIRNPSIRRLCSGAIAGAISRTTVAPLETIRTHLMVGSSGHSSTEVFNDIMKTDGWKGLFRGNLVNVIRVAPSKAIELFAYDTVNKNLSTKPGEQSKHPVPASLIAGACAGVSSTICTYPLELLKTRLTIQRGVYNGLLDAFVKIIKEEGPGELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKFFKQEKIGNIETLLIGSAAGAISSTATFPLEVARKQMQVGALNGRQVYKDVLHALVSILEKEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKKILIDDDQEE 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01323 390 PRINTS Mitochondrial carrier protein signature 124 138 IPR002067 GO:0055085
Vivi3g01323 390 PRINTS Mitochondrial carrier protein signature 215 233 IPR002067 GO:0055085
Vivi3g01323 390 PRINTS Mitochondrial carrier protein signature 164 184 IPR002067 GO:0055085
Vivi3g01323 390 PRINTS Mitochondrial carrier protein signature 303 325 IPR002067 GO:0055085
Vivi3g01323 390 PRINTS Mitochondrial carrier protein signature 257 275 IPR002067 GO:0055085
Vivi3g01323 390 PRINTS Mitochondrial carrier protein signature 111 124 IPR002067 GO:0055085
Vivi3g01323 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 106 189 IPR018108 -
Vivi3g01323 390 Gene3D Mitochondrial carrier domain 103 388 IPR023395 -
Vivi3g01323 390 FunFam Adenine nucleotide transporter BT1, chloroplastic/mitochondrial 104 387 - -
Vivi3g01323 390 PANTHER SOLUTE CARRIER FAMILY 25 101 383 - -
Vivi3g01323 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 294 382 IPR018108 -
Vivi3g01323 390 ProSiteProfiles Solute carrier (Solcar) repeat profile. 200 284 IPR018108 -
Vivi3g01323 390 SUPERFAMILY Mitochondrial carrier 107 378 IPR023395 -
Vivi3g01323 390 Pfam Mitochondrial carrier protein 108 192 IPR018108 -
Vivi3g01323 390 Pfam Mitochondrial carrier protein 200 287 IPR018108 -
Vivi3g01323 390 Pfam Mitochondrial carrier protein 294 385 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01323 Vivi-Chr3 21621255 21624194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01323 1 389 Organic Solute Cotransporters AT4G32400 65.414 3.44e-179 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01323 K14684 - csav:115699977 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01323 3 21621255 21624194 Vivi3g01323 3 21621255 21624194 ECH
Vivi4g05078 4 181738118 181741544 Vivi3g01323 3 21621255 21624194 PCT