Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05043 ATGCTGAACAAGCTTTTCAACAAGCTTCCTCGGAAATCTTCTAAAATTGATGAAGATGAGTCGGCCCGGGTTGTCGAATCCCCGCGTGCTGCTGGTAAATGCGTCAATCGACAGCAAGGTGGTGGTGTTGCGGTGAAACGAGCTTCTTCGTCGGCGGTGTTTCCTGCTAGCATGGTTTCTGGGATTGAACCTTTGGTGCCGTTTAAGGATGTTCCGAATGGTGAAAAGATGAACTTGTTTGTGAGCAAATTGAGTCTTTGTTGTGTGACATTTGATTTTACTGATCCTGCTAAGAACATTGCTGAGAAAGATGTGAAAAGGAAAACTTTGGTTGAACTTATTGATTTTGTGGTTTGTGCATCAATGAAGTTTAGTGAACCTGCTATTCTTGCGATGTGTAGAATGTGTGCTATTAATTTGTTTAGAGTTTTTCCGCCTAATTATAGGGTTAACGGAGTTGTTGCTATTGGCGCTGAGAATGATGATGATGACCCGATGTTTGATCCGGCTTGGCCACATTTGCAACTTGTTTATGAATTGCTGCTTAAGTTTATCTCTTCTTCGTGTCTCGATGCTAGAGTAGCGAAAAAGTATATCGATCATTCGTTCATTTCGAAGTTGCTTGAACTGTTTGATTCCGAGGATCCAAGAGAAAGAGACTGTTTGAAGACGATTCTGCATAGGGTTTATGGGAAGTTCATGGTGCATAGACCCTTTATTCGGAAAACAATTAACAATATATTCTATCGATTCGTGATTGAGACCGAGAAACATAACGGGATTGCTGAGTTGTTGGAGATTTTTGGGAGTGTGATTTGTGGATTTGCTTTGCCCTTGAAAGAGGAACACAAAATCTTCTTGTGGAGAGTTTTGATCCCCTTGCACAAGCCTAAATCTTTGGGGGTGTACTTTCCGCAACTGTCTTTCTGTATTACGCAGTTCTTAGAGAAGGAGCCGAAGTTAGCGAGCATTGTTATAAGTGGTATGCTAAAATATTGGCCCGTAATAAATAGTCAGAAAGAAGTGATGTTTCTCGGGGAATTGGAAGAAATTTTGGAAGGAATCAACATGGTAGAGTTCCAGAGGATCATGATTCCACTGTTTTTGCGGATTTCGTGCTGCATTAACAGCCTACACTTCCAGGTAGCTGAAAGGACCCTTTTCCTATGGAACAACGACCACATTGTAAATTTGATCGCTCATAACCGACAAGTGATCCTGCCCATCATATTTCCGGCACTAGATAGGAATATTAAAAGCCACTGGAACCCAGCAGTTGTAAACTTAACTATCAACATCAGAAAGATGTTCGTCGAGATGGATGAGAAGCTTTTCATATCTTGCCATACTCAATTTAAGGAAGAAGAGGCACTTTTAATCTCAGAAGCCGAAAGGCGAAAGGAAGCATGGAAACAACTAGAGCAGGCAGCCAGTCTGAAACCTGTAATTGGAAATACTGCTGTTTTAGTGTCTCCTTTGATGATATGA 1488 0.414 MLNKLFNKLPRKSSKIDEDESARVVESPRAAGKCVNRQQGGGVAVKRASSSAVFPASMVSGIEPLVPFKDVPNGEKMNLFVSKLSLCCVTFDFTDPAKNIAEKDVKRKTLVELIDFVVCASMKFSEPAILAMCRMCAINLFRVFPPNYRVNGVVAIGAENDDDDPMFDPAWPHLQLVYELLLKFISSSCLDARVAKKYIDHSFISKLLELFDSEDPRERDCLKTILHRVYGKFMVHRPFIRKTINNIFYRFVIETEKHNGIAELLEIFGSVICGFALPLKEEHKIFLWRVLIPLHKPKSLGVYFPQLSFCITQFLEKEPKLASIVISGMLKYWPVINSQKEVMFLGELEEILEGINMVEFQRIMIPLFLRISCCINSLHFQVAERTLFLWNNDHIVNLIAHNRQVILPIIFPALDRNIKSHWNPAVVNLTINIRKMFVEMDEKLFISCHTQFKEEEALLISEAERRKEAWKQLEQAASLKPVIGNTAVLVSPLMI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05043 495 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 67 477 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vivi4g05043 495 SUPERFAMILY ARM repeat 78 472 IPR016024 -
Vivi4g05043 495 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 72 476 - -
Vivi4g05043 495 Gene3D - 72 476 IPR011989 -
Vivi4g05043 495 PIRSF PP2A_B56 6 491 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vivi4g05043 495 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 478 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05043 Vivi-Chr4 181201451 181204153 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05043 K11584 - gmx:100781390 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05043 4 181201451 181204153 Vivi3g01251 3 20905304 20908142 PCT