Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01251 ATGCTCAAGCAAATCCTAAGTAAACTTCCTCGGAAAACATCGAAAACCGACTCGGACGAGTCAAGCCGAGGTGACTCGTCCTGCCGGAGCGATTCGCCTCGTGCCGGGAAGAGTAGCAAGTCACACGGCGGAAATGATGGTGCCAAAACCAATGCAGCGAAAAAGAATTCATCGGCGGCTGTTTTCCCGACAAGCACCGTGTCGTTGATAGAACCTTTGGTGCCGTTTAAGGATGTTGCGGGTTCTGAAAAGATGAACCTTTTTGTGAGCAAGTTGAGTCTTTGTTGTGTTGCGTTTGATTTCACCGATCCTGGTAAGAACATTGTGGAGAAAGATGTAAAAAGAAGAACTTTGATTGAACTTGTTGATTTTGTTTCTTCTTTTGGGTCTGCAAGGTTTAGTGAGCCTGCTATTCTTGCAATGTGTAGAATGTGTGCTATTAATCTCTTTCGTGTTTTCCCGCCGAATTATCGAGCCAATAATCGGGCCGGCGGTGGTGTTGAGAATGACGATGACGAGCCGTCTTTCGATCCTGCTTGGCCTCATCTTCAACTTGTTTATGAATTGTTGCTTAAGTTTATAACATCTTCTTGCCTTGATGCTAAGGTTGCAAAAAAGTATTTCGACCATTCGTTTATTTCGAAATTGTTGGAGTTGTTTGATTCGGAGGATCCTAGAGAAAGGGATTGTTTAAAGACAATAATGCATAGGGTGTATGGCAAATTCATGGTTCATAGACCTTACATTCGGAAATCGTTTAACAATGTGTTTCATAGGTTTGTGTTTGAGACCGAGAAGCATAACGGGATTGCTGAGTTGTTGGAGATTTTCGGGAGCGTAGTTAGTGGATTTGCTTTGCCATTGAAAGAGGAACACAAAATCTTCTTGTGGAGAATTTTGATCCCTTTGCACAAGCCTAGATCTATGGGGGCTTACTTCCAACAATTGTCTTATTGTGTTACACAGTTTATAGAGAAAGAGCCTAAGTTGGCAAGCATTGTGATTAGGGGTTTGTTGAAATATTGGCCAATAACACATAGTCAGAAAGAGGTGATGTTCCTCGGTGAGTTGGAAGAAATTTTGGAAACAATTAACATGGTTGAGTTCCAAAAGGTCATGGTGCCATTGTTTTGGCGAATTGGATGCTGCATTAGTAGTTTGCATTTTCAGGTATCCGAAAGAGCCCTTTACTTATGGAACAATGACCACATCGTCAATTTGATTGCTCACAACCGTCAGGTGATACTACCTATCATAATTCCCGCACTTGAGAGAAACTCTCAGAGCCACTGGAACCCAGCAGTGCTCAACTTAACTCATAATGTTAGAAAGATGTTCATAGAGATGGATGAGAATCTGTTCCTTTCTTGTCGTTCTCAGTTTAAGGAGGAAGAAGCAATGCTAAACACAGAATCCGAGAAACGGAAAGAAGCTTGGAGACAATTAGAACATGCAGCCAGTCTCAAACTTACAGTCGGAAACACAGCTGTTTTAGTTTCTCCGGTTTTATAA 1512 0.42 MLKQILSKLPRKTSKTDSDESSRGDSSCRSDSPRAGKSSKSHGGNDGAKTNAAKKNSSAAVFPTSTVSLIEPLVPFKDVAGSEKMNLFVSKLSLCCVAFDFTDPGKNIVEKDVKRRTLIELVDFVSSFGSARFSEPAILAMCRMCAINLFRVFPPNYRANNRAGGGVENDDDEPSFDPAWPHLQLVYELLLKFITSSCLDAKVAKKYFDHSFISKLLELFDSEDPRERDCLKTIMHRVYGKFMVHRPYIRKSFNNVFHRFVFETEKHNGIAELLEIFGSVVSGFALPLKEEHKIFLWRILIPLHKPRSMGAYFQQLSYCVTQFIEKEPKLASIVIRGLLKYWPITHSQKEVMFLGELEEILETINMVEFQKVMVPLFWRIGCCISSLHFQVSERALYLWNNDHIVNLIAHNRQVILPIIIPALERNSQSHWNPAVLNLTHNVRKMFIEMDENLFLSCRSQFKEEEAMLNTESEKRKEAWRQLEHAASLKLTVGNTAVLVSPVL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01251 503 MobiDBLite consensus disorder prediction 10 27 - -
Vivi3g01251 503 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 75 486 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vivi3g01251 503 MobiDBLite consensus disorder prediction 28 55 - -
Vivi3g01251 503 Gene3D - 81 485 IPR011989 -
Vivi3g01251 503 MobiDBLite consensus disorder prediction 1 55 - -
Vivi3g01251 503 PIRSF PP2A_B56 3 499 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vivi3g01251 503 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 80 485 - -
Vivi3g01251 503 SUPERFAMILY ARM repeat 86 480 IPR016024 -
Vivi3g01251 503 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 487 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01251 Vivi-Chr3 20905304 20908142 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01251 K11584 - gmx:100808283 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01251 3 20905304 20908142 Vivi3g01251 3 20905304 20908142 ECH
Vivi4g05043 4 181201451 181204153 Vivi3g01251 3 20905304 20908142 PCT