Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04567 ATGGTGAATCTTTTGCCAATGTGTCCCCTAAGCCGCAATGAGCTAGAACTGATTTTTGAGAATCTAGATTCAAATGGCGATGGATTTGTAACCCTTGAGGAGCTGAATCAGTTACTAAAGAGAACAGGTTTCAAGTTTAGCATAGAGGAGCTTGAATCTCTAGTGGGGGTGAAGAGTCTAGACATGAGTGAGTTCATGTTATTTTATGACTCCATAAATGGGGGGAGGAAAGATGGTGATGAGATTGAGGAGGTAGAGAGTGATCTTTTGAAGGCTTTTAAGGTGTTTGATTTGGATGGAGATGGATTCATCACTAGTCAAGAATTGGAATGTGTGTTGAAGAGGCTTGGGATGTGGGGTGAAGAAAGGGATTGTAGATCAATGATTTACTCATATGATACTAATTTAGATGGCAAGCTTGATTTCAAGGAATTTAAGAACATGATGTTGCTTACACTAAAACGTATTTAG 471 0.3907 MVNLLPMCPLSRNELELIFENLDSNGDGFVTLEELNQLLKRTGFKFSIEELESLVGVKSLDMSEFMLFYDSINGGRKDGDEIEEVESDLLKAFKVFDLDGDGFITSQELECVLKRLGMWGEERDCRSMIYSYDTNLDGKLDFKEFKNMMLLTLKRI 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04567 156 FunFam Calmodulin 1 12 152 - -
Vivi4g04567 156 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Vivi4g04567 156 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Vivi4g04567 156 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Vivi4g04567 156 ProSiteProfiles EF-hand calcium-binding domain profile. 10 45 IPR002048 GO:0005509
Vivi4g04567 156 Pfam EF-hand domain pair 87 149 IPR002048 GO:0005509
Vivi4g04567 156 Pfam EF hand 14 41 IPR002048 GO:0005509
Vivi4g04567 156 Gene3D - 70 155 - -
Vivi4g04567 156 CDD EFh 88 149 IPR002048 GO:0005509
Vivi4g04567 156 SUPERFAMILY EF-hand 12 151 IPR011992 -
Vivi4g04567 156 ProSitePatterns EF-hand calcium-binding domain. 23 35 IPR018247 -
Vivi4g04567 156 SMART efh_1 14 42 IPR002048 GO:0005509
Vivi4g04567 156 SMART efh_1 124 152 IPR002048 GO:0005509
Vivi4g04567 156 SMART efh_1 88 116 IPR002048 GO:0005509
Vivi4g04567 156 Gene3D - 10 69 - -
Vivi4g04567 156 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 60 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04567 Vivi-Chr4 173437706 173438460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04567 10 150 EF-hand Containing Proteins AT1G21550 43.919 1.14e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04567 K13448 - gmx:100500561 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04567 4 173437706 173438460 Vivi4g04567 4 173437706 173438460 ECH
Vivi4g04567 4 173437706 173438460 Vivi3g03025 3 51296106 51296908 PCT