Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03025 ATGTTGTTTGGGAATATGTCTCTTCTATCTACCACAGACTTGCATCGTATTTTTGAGAAGCTAGACACAAATAACGACGGTTTTCTGAGCCTTGAAGAAATGAACTCTTTGCTGCAAAAAATAGGAAACAACAATTCTCAATTCACCTTACATGAACTTGAATCTCTGGTACAAAAGAAGAGCTTAGACTTCAATGAATTCTTGTTCTTTTACAACTCGATATCGAAACCGAACAATGATGATGACGATGATGATGAGTTGTTGGAGAAGGATCTTGCAACAACTTTCAAAGTGTTTGATTTGGATGGTGATGGATTCATCACAAGCCAAGAACTTGAGTGTGTGTTGAAGAAACTTGGATTCTTGGATGAAACAAGTGGCAAAGATTGTAGAAGCATGATTCAGTTTTATGATACTAATTTGGATGGTAGGCTTGATTTTCAGGAATTCAAGAACATGATGTTGATTACAACTGCATGA 480 0.3625 MLFGNMSLLSTTDLHRIFEKLDTNNDGFLSLEEMNSLLQKIGNNNSQFTLHELESLVQKKSLDFNEFLFFYNSISKPNNDDDDDDELLEKDLATTFKVFDLDGDGFITSQELECVLKKLGFLDETSGKDCRSMIQFYDTNLDGRLDFQEFKNMMLITTA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03025 159 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Vivi3g03025 159 FunFam Calmodulin 1 6 157 - -
Vivi3g03025 159 SUPERFAMILY EF-hand 13 155 IPR011992 -
Vivi3g03025 159 ProSiteProfiles EF-hand calcium-binding domain profile. 125 159 IPR002048 GO:0005509
Vivi3g03025 159 CDD EFh 96 154 IPR002048 GO:0005509
Vivi3g03025 159 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 61 154 - -
Vivi3g03025 159 Gene3D - 71 154 - -
Vivi3g03025 159 SMART efh_1 129 157 IPR002048 GO:0005509
Vivi3g03025 159 SMART efh_1 91 119 IPR002048 GO:0005509
Vivi3g03025 159 SMART efh_1 13 41 IPR002048 GO:0005509
Vivi3g03025 159 Pfam EF-hand domain pair 90 154 IPR002048 GO:0005509
Vivi3g03025 159 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Vivi3g03025 159 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Vivi3g03025 159 ProSiteProfiles EF-hand calcium-binding domain profile. 87 122 IPR002048 GO:0005509
Vivi3g03025 159 Gene3D - 2 70 - -
Vivi3g03025 159 Pfam EF hand 13 40 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03025 Vivi-Chr3 51296106 51296908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03025 7 155 EF-hand Containing Proteins AT1G21550 43.421 2.05e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03025 K13448 - gmx:100527117 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03025 3 51296106 51296908 Vivi3g03025 3 51296106 51296908 ECH
Vivi4g04567 4 173437706 173438460 Vivi3g03025 3 51296106 51296908 PCT