Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02771 ATGCTTGTGGCATTGCTCTTGCTTTTGGCATTGAGCAATGCCGTTAATGGAGATTTTGAGCAGTGCGGTTTGAATCCGAAATTGGATCCTAGACCACACACGGTCTCTATTTTGGAGTTTGGTGCTGTTGGTGATGGTAAAACACTGAATACACTTGCATTACAGAATGCAATTTTCTATGTCAAGTCGTTCGCTGATAAGGGCGGTGCTCAGCTCTATGTGCCGCCGGGAAAATGGCTCACCGGCAGTTTCAATCTTACCAGCCATCTCACTCTCTTTTTGGAGAAAGGTGCTGTTATTATTGGATCTCAGAATCCATCTCATTGGGATGTTGTTGAAGCTTTACCTTCGTATGGTCGAGGGAAAGATGTTCCTGAAGGAAGATACAAGAGTTTAATAAACGGTTACAAGTTGGAGGATGTGGTTATAACAGGAAATAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAATGGTATAACTCTCATTCGCTTAACCATAGTCGTCCTCATTTGGTTGAAATTATATCCTCCGATTTTGTCGTAGTTTCAAATCTTACATTCTTGAATGCTCCGGCATATAGCATCCACCCGGTTTATTGCAGCAATGTACATATTCAAAATGTTTCAATCTCCACTCCACCAGAAGCCCCCTATACCGCCGGTATAGTACCAGATTCCTCGGATAATGTTTGTATAGAAGATTGTAACGTATCCATTGGATATGACGCAATATCTCTCAAAAGTGGTTGGGATCAGTACGGCATAACCTATGGAAGACCGGCTGAGAAAATACACATAAGAAGGGTTCATCTCCATGCATTTTCCGGCTCTGCTATTTCATTCGGTACTGAAATGTCTGGCGGAATTTCAAATGTTCTAATAGAGCATGTCCACATTGTCCACTCAAATAGTGGCATCGAGTTCAGAACAACCAAAGGAAGAGGTGGTTACTTAAAAGAAATCGCTATATCCAACATCGAAATGGAAAATGTTTATACAGCAATTTCAGCCAAAGGTAATTGTGGATCTCATCCCGATGACAAGTTCGATCCAAAAGCATTTCCGCTTTTGAATCACATTACTTTGAAGGATATTATCGGAACAAATATCACCATTGCTGGAAACTTCAGCGGCATTGAAGAGTCTCCCTTCACCGATATCTGCCTTTCAAATATAACCTTGTCCACAAATTCTGTTTCTTCCATTACATGGGAATGTTCAAATGTCTCCGGATTTTCAGACTCAGTCCTCCCTAAGCCTTGTCAAGAGCTCGATAACCCTACAAATTCGTCCTCCTCCTCCTGTTTCTATCTCATCAGTCTTGGTGAAAACAAATCTGCAGCGCTTTAA 1356 0.4174 MLVALLLLLALSNAVNGDFEQCGLNPKLDPRPHTVSILEFGAVGDGKTLNTLALQNAIFYVKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQNPSHWDVVEALPSYGRGKDVPEGRYKSLINGYKLEDVVITGNNGTIDGMGMVWWEWYNSHSLNHSRPHLVEIISSDFVVVSNLTFLNAPAYSIHPVYCSNVHIQNVSISTPPEAPYTAGIVPDSSDNVCIEDCNVSIGYDAISLKSGWDQYGITYGRPAEKIHIRRVHLHAFSGSAISFGTEMSGGISNVLIEHVHIVHSNSGIEFRTTKGRGGYLKEIAISNIEMENVYTAISAKGNCGSHPDDKFDPKAFPLLNHITLKDIIGTNITIAGNFSGIEESPFTDICLSNITLSTNSVSSITWECSNVSGFSDSVLPKPCQELDNPTNSSSSSCFYLISLGENKSAAL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02771 451 SMART pbh1 179 201 IPR006626 -
Vivi4g02771 451 SMART pbh1 320 341 IPR006626 -
Vivi4g02771 451 SMART pbh1 263 285 IPR006626 -
Vivi4g02771 451 SMART pbh1 202 228 IPR006626 -
Vivi4g02771 451 SMART pbh1 291 312 IPR006626 -
Vivi4g02771 451 SMART pbh1 229 250 IPR006626 -
Vivi4g02771 451 SUPERFAMILY Pectin lyase-like 30 426 IPR011050 -
Vivi4g02771 451 Pfam Glycosyl hydrolases family 28 130 412 IPR000743 GO:0004650|GO:0005975
Vivi4g02771 451 Gene3D - 24 417 IPR012334 -
Vivi4g02771 451 PANTHER PECTIN LYASE-RELATED 4 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02771 Vivi-Chr4 132308058 132311196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02771 1 450 Glycoside Hydrolase AT3G16850 61.589 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02771 - - gmx:100777503 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02771 4 132308058 132311196 Vivi4g02771 4 132308058 132311196 ECH
Vivi1g01091 1 23210566 23213988 Vivi4g02771 4 132308058 132311196 PCT