Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01091 ATGCTAGTAGCATTGCTGTTGCTGGTGCTGGCATTGAGCAACGGAGCGAGAGTGAATGGTGAAAGAGGTGGAAGGCAATGTGGGGCGAATCCGTCGCTAAAGCCGAGGCCACATAGTGTCTCCATTTTGGAGTTTGGTGCGGTGGGAGATGGTAAAACATTGAACACCATTGCATTTCAGAATGCTGTATTCTATCTCAAGTCATTTGCGGACAAAGGTGGTGCTCAACTGTATGTGCCACCTGGAACATGGCTTACTCAAAGTTTCAATCTTACTAGCCATCTTACACTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCCTATCACTGGGAAGTTGTTGCTCCTTTACCGTCTTATGGTCGAGGACTTGAAGTTCCTGGAGGAAGATATCAGAGCTTGATAAATGGATACAAGTTACATGATGTGGTCATAACAGGTAATAACGGAACCATTGATGGCATGGGATTGACTTGGTGGGAATCATTTAAATCTCATTCCTTGAACTATAGTCGTCCTCATCTGGTTGAATTAGTGGCATCTAATGACGTCGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCATATAACATTCACCCGGTTTATTGCAGCAATGTACATATTCATAATATCTCAATCTTTGCCCCTCCGGAATCCCCTTATACTGTTGGCATAGTACCAGATTCTTCTGACCATGTTTGCATAGAGGATTGTACCATTGCCACCGGCTATGATGCAATTGCCCTAAAAAGCGGCTGGGACGAGTACGGAATCACCTACGGTAGGCCTACTGAGAATGTCCACATCAGAAGGGTACATCTACAAGCATCTTACGGCTCCACTCTTGCATTTGGAAGTGACATGTCTGGTGGCATTTCAAATGTTGTTGTGGAGCATATTCATCTCCACAACTCAAAAGGTGGCATCGAATTCAGAACTGTTAAAGGAAGAGGTGGTTACATGAAGGAAATAGTCATATCCGACGTGGAAATGAAGAATATCTACACAGCAATATCTGCCACAGGTTATTGTGGTTCTCATCCTGATGACAAGTTTGATCCTAATGCTTTACCACTTTTGGATCACTTTATTTTGCGAGATATGATTGGAACAAACATCACTATTGCTGGAAGCTTTGCTGGACTAGAAGAATCTCCATTCACTAATATATGCTTATCTAATATTACCTTGTCTGTAAATTATGCTTCCTCCACTACATGGAATTGCTCAAATGTTTCTGGATTTTCAGATTCTGTTGTCCCTAAACCTTGTTCTGAACTTGACAACCCTTCGAATTATTCCTCCTCATCTTGTCTCTCCATGTTGAGTATGAAAGGGAAAACTGCCGTGTCCGGCTCGCTGTCGATGAAAAAGTGA 1389 0.4255 MLVALLLLVLALSNGARVNGERGGRQCGANPSLKPRPHSVSILEFGAVGDGKTLNTIAFQNAVFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVIIGSQDPYHWEVVAPLPSYGRGLEVPGGRYQSLINGYKLHDVVITGNNGTIDGMGLTWWESFKSHSLNYSRPHLVELVASNDVVVSNLTFLNAPAYNIHPVYCSNVHIHNISIFAPPESPYTVGIVPDSSDHVCIEDCTIATGYDAIALKSGWDEYGITYGRPTENVHIRRVHLQASYGSTLAFGSDMSGGISNVVVEHIHLHNSKGGIEFRTVKGRGGYMKEIVISDVEMKNIYTAISATGYCGSHPDDKFDPNALPLLDHFILRDMIGTNITIAGSFAGLEESPFTNICLSNITLSVNYASSTTWNCSNVSGFSDSVVPKPCSELDNPSNYSSSSCLSMLSMKGKTAVSGSLSMKK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01091 462 SMART pbh1 234 255 IPR006626 -
Vivi1g01091 462 SMART pbh1 325 346 IPR006626 -
Vivi1g01091 462 SMART pbh1 184 206 IPR006626 -
Vivi1g01091 462 SMART pbh1 296 317 IPR006626 -
Vivi1g01091 462 SMART pbh1 268 290 IPR006626 -
Vivi1g01091 462 SMART pbh1 207 233 IPR006626 -
Vivi1g01091 462 Gene3D - 29 423 IPR012334 -
Vivi1g01091 462 Pfam Glycosyl hydrolases family 28 136 417 IPR000743 GO:0004650|GO:0005975
Vivi1g01091 462 SUPERFAMILY Pectin lyase-like 32 431 IPR011050 -
Vivi1g01091 462 PANTHER PECTIN LYASE-RELATED 5 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01091 Vivi-Chr1 23210566 23213988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01091 1 436 Glycoside Hydrolase AT3G06770 63.470 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01091 - - gmx:100802343 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01091 1 23210566 23213988 Vivi1g01091 1 23210566 23213988 ECH
Vivi1g01091 1 23210566 23213988 Vivi4g02771 4 132308058 132311196 PCT