Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02682 ATGGCAATGAAGGAGGAGACAAGTCAGTGGAAGCAGGCCATGATTAATTCCTCGGCTGGGGCGATTTCTGGTGCTATTTCACGGACAGTGACGTCACCTCTTGATGTTATTAAAATTAGATTCCAGGTTCAACTAGAGCCCACTTCCTCTTGGACGTCACTACGCAGGGATTTGTCCAAACCCTCAAAATATACAGGCATGTTTCAAGCAACCAAAGATATTTTTAGAGAAGAAGGCATACGGGGTTTTTGGCGGGGTAATGTACCAGCTTTGCTCATGGTTATGCCATATACAGCTATACAGTTTACTGTTTTGCATACATTGAAGACTTTGGCCTCTGGTTCATCCAAGACAGAGAATCACATTAATCTGAGCCCTTATCTATCCTATGTAAGTGGGGCATTAGCTGGGTGTGCAGCTACTGTGGGGTCATATCCATTTGATCTTCTTCGAACTATATTAGCTTCTCAGGGTGAACCAAAGGTTTATTCAAACATGAGGTCAGCATCCATAGATATTCTCCGGACTCGTGGGTTTCGAGGCTTGTATTCCGGATTGTCACCGACACTAGTTGAGATTATACCTTATGCAGGCCTACAATTCGGCACTTATGATACATTCAAACGTTGGGCCATGGCGTGGAACCATGCTCAATATTCAAATACTGTTGCAGAAGAGAGCCTCTCTAGCTTTCAGCTTTTCCTGTGTGGGCTAGCAGCAGGAACATGTGCCAAGCTTGTCTGTCATCCACTTGATGTAGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGATATGGAGCTCGGCTTGAACATCGCGCATATAAAAATATGTTTGACGGCTTGAAACAGATATTACAGATGGAGGGTTGGGCTGGTTTGTATAAGGGGATAGTTCCATCTACTGTTAAAGCTGCACCAGCTGGTGCTGTAACTTTTGTTGCTTATGAATTGACATCAGATTGGCTGGAGTCTATTTTGACTTGA 996 0.4367 MAMKEETSQWKQAMINSSAGAISGAISRTVTSPLDVIKIRFQVQLEPTSSWTSLRRDLSKPSKYTGMFQATKDIFREEGIRGFWRGNVPALLMVMPYTAIQFTVLHTLKTLASGSSKTENHINLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYSNMRSASIDILRTRGFRGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWAMAWNHAQYSNTVAEESLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARLEHRAYKNMFDGLKQILQMEGWAGLYKGIVPSTVKAAPAGAVTFVAYELTSDWLESILT 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02682 331 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Vivi4g02682 331 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085
Vivi4g02682 331 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Vivi4g02682 331 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Vivi4g02682 331 PRINTS Mitochondrial carrier protein signature 86 106 IPR002067 GO:0055085
Vivi4g02682 331 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Vivi4g02682 331 FunFam Mitochondrial thiamine pyrophosphate carrier 1 7 328 - -
Vivi4g02682 331 PANTHER SOLUTE CARRIER FAMILY 25 7 326 - -
Vivi4g02682 331 SUPERFAMILY Mitochondrial carrier 11 320 IPR023395 -
Vivi4g02682 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 210 IPR018108 -
Vivi4g02682 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 325 IPR018108 -
Vivi4g02682 331 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Vivi4g02682 331 Pfam Mitochondrial carrier protein 228 326 IPR018108 -
Vivi4g02682 331 Pfam Mitochondrial carrier protein 10 112 IPR018108 -
Vivi4g02682 331 Gene3D Mitochondrial carrier domain 7 328 IPR023395 -
Vivi4g02682 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 111 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02682 Vivi-Chr4 128209051 128215704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02682 5 331 Organic Solute Cotransporters AT3G21390 74.320 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02682 K15108 - gmx:100783563 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02682 4 128209051 128215704 Vivi4g02682 4 128209051 128215704 ECH
Vivi1g01175 1 24657055 24660375 Vivi4g02682 4 128209051 128215704 PCT