Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01175 ATGGAGGAACCTAGCCAAGTGAAACGTGCTATTATTGATTCATCTGCTGGAGCAATTTCTGGGGGAATTTCTCGTACTGTAACATCACCTCTTGATGTTATTAAGATTAGATTTCAGGTTCAACTTGAACCAACTTCTTCATGGGCTTTACTGCGAAAAGATTTGGTTATAACCGCGCCGTCGAAGTATACTGGTATGCTTCAAGCTAGTAAAGATATTCTTAGAGAAGAAGGCTTTAAGGGTTTTTGGCGAGGGAATGTACCGGCTTTGCTCATGGTTATGCCGTATACAGCGATTCAATTTACAGTTTTACATAAGTTAAAGACTCTTGCATCTGGTTCTTCCAAGACAGAGAACCACACTAATTTGAGCCCTTATCTATCCTATGTCAGTGGCGCCCTAGCTGGGTGTGCGGCTACTGTTGGTTCATATCCTTTTGATCTTCTCCGAACCATATTAGCTTCTCAAGGAGAGCCAAAGGTGTATCCAAACATGAGGTCAGCATTTATGGACATCATCCAGACTCGTGGATTTCAAGGCATGTATGCTGGATTGTCTCCAACTTTAGTTGAAATTGTACCTTATGCAGGTTTACAATTCGGAACATATGATACTTTTAAGCGTTGGGCCTCGGCTTGGAACCATAATAGATATTCCCACACCACAGGAGATGATAGTATTTCTAGCTTTCAGCTTTTCCTTTGTGGGTTGGCGGCCGGAACATGTGCTAAACTTGTCTGTCATCCTCTAGATGTTGTCAAGAAAAGATTTCAGATTGAAGGGCTTCAAAGACATCCAAGATACGGAGCTCGAGTCGAGCATCGAGCATACAGTAATATGTATGATGCGGTGCATAGGATATTTCGGGCAGAGGGTTGGGCTGGACTATACAAGGGGATAATTCCATCAACTATTAAAGCTGCACCTGCTGGTGCTGTCACATTTGTTGCATATGAGTTGGTATCAGATTGGCTAGAATCCTTGACTTGA 990 0.4263 MEEPSQVKRAIIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLVITAPSKYTGMLQASKDILREEGFKGFWRGNVPALLMVMPYTAIQFTVLHKLKTLASGSSKTENHTNLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPNMRSAFMDIIQTRGFQGMYAGLSPTLVEIVPYAGLQFGTYDTFKRWASAWNHNRYSHTTGDDSISSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYSNMYDAVHRIFRAEGWAGLYKGIIPSTIKAAPAGAVTFVAYELVSDWLESLT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01175 329 PANTHER SOLUTE CARRIER FAMILY 25 14 325 - -
Vivi1g01175 329 FunFam Mitochondrial thiamine pyrophosphate carrier 1 4 327 - -
Vivi1g01175 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 227 324 IPR018108 -
Vivi1g01175 329 Gene3D Mitochondrial carrier domain 5 327 IPR023395 -
Vivi1g01175 329 SUPERFAMILY Mitochondrial carrier 9 321 IPR023395 -
Vivi1g01175 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 209 IPR018108 -
Vivi1g01175 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 110 IPR018108 -
Vivi1g01175 329 Pfam Mitochondrial carrier protein 226 325 IPR018108 -
Vivi1g01175 329 Pfam Mitochondrial carrier protein 123 209 IPR018108 -
Vivi1g01175 329 Pfam Mitochondrial carrier protein 14 111 IPR018108 -
Vivi1g01175 329 PRINTS Mitochondrial carrier protein signature 85 105 IPR002067 GO:0055085
Vivi1g01175 329 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Vivi1g01175 329 PRINTS Mitochondrial carrier protein signature 236 258 IPR002067 GO:0055085
Vivi1g01175 329 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Vivi1g01175 329 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Vivi1g01175 329 PRINTS Mitochondrial carrier protein signature 182 200 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01175 Vivi-Chr1 24657055 24660375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01175 1 327 Organic Solute Cotransporters AT3G21390 73.193 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01175 K15108 - gmx:100784986 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01175 1 24657055 24660375 Vivi4g02682 4 128209051 128215704 PCT