Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02401 ATGGTGATGCAGGTTGACAAGAAAGAGAGAAAAATAGTGGTGAGTAAGCCACTACAAGTTGCAAAAGAATCAGATTCAGAAGAAGGTTACAATGCCCCAAATCTTTTACAACGCTTATTAAGTTTATTCAAGAATGTACGGTCAGGATCTGATCTCACATCCCTCCAGTTGCCACCATTGTTTAACTTACCAAAATCCCAACTACAATGCTATGGTGAATCAGTGTATTGCACTGCTTCAGACATACTAAGCATATGCAACAGAGGACAGAGTCCACTAGATAGGTTCATATCTGTTGTAGCATGGTGCATATCTACCACACGTCCGGCATCTTTTGGGGTTGCTCCTTATAATCCTATTCTTGGTGAGACACATCATGTTTCAAAGGAAAATCTTAATGTCTTACTTGAACAGGTGTCGCACCACCCTCCGGTAACGGCCCTCCACGCAACTGATGAGAAGGAAAATATTGAAATCATATGGTGTCAGCAACCTGTTCCTAAATTTTATGGCACATCAGTTGAAGCTCAAGTGCATGGTAAAAGGGAACTGAAGCTCTTAAACCATGGAGAAACATATGAGATGAATTGTCCTCATCTTTTATTTAGAATTCTACCAATTCCTGGTGCTGATTGGGTTGGCACGGTTGATATAAGGTGCTTAGAGACAGGGTTAGTAGCTGAGTTAACTTACAAGTCAAGTCATTCATTTCTAGGACTTGGTGGAAATCATAAAGTCATCAAAGGGAAGATCCTTGACTCTTCATCCTTGGAAGTTCTATATGAAATTGATGGTCATTGGGATAGGACTGTAAAACTGAAAGATAGAAAAAATGGGAAAGTTAGAGTGATATATGATGCAACAGAAGTCATGTCAGGACTAAAAGCACCCATTCTCAAGGATGAAGAGTGTGTGTGGCCAACAGAATCAGTGAATGTTTGGAGTGAATTGAGCCAAGCCATAATGACCAAAGATTGGGAGAAAGCAAGAGAAGCAAAGCAAGTAGTGGAGGAGAGACAAAGGGAGCTTGTTAGAGAAAGAGAGTCAAAAGGAGAAAATTGGATTCCTAAACATTTTGTAGTGTCTTACAGCAAAGAAGTAGGGTGGGACTGTTCACCTATTCATCAATGTGTATCAGCTGCTCCTATCATAGCACTATAA 1161 0.4031 MVMQVDKKERKIVVSKPLQVAKESDSEEGYNAPNLLQRLLSLFKNVRSGSDLTSLQLPPLFNLPKSQLQCYGESVYCTASDILSICNRGQSPLDRFISVVAWCISTTRPASFGVAPYNPILGETHHVSKENLNVLLEQVSHHPPVTALHATDEKENIEIIWCQQPVPKFYGTSVEAQVHGKRELKLLNHGETYEMNCPHLLFRILPIPGADWVGTVDIRCLETGLVAELTYKSSHSFLGLGGNHKVIKGKILDSSSLEVLYEIDGHWDRTVKLKDRKNGKVRVIYDATEVMSGLKAPILKDEECVWPTESVNVWSELSQAIMTKDWEKAREAKQVVEERQRELVRERESKGENWIPKHFVVSYSKEVGWDCSPIHQCVSAAPIIAL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02401 386 Pfam Oxysterol-binding protein 44 362 IPR000648 GO:0008289
Vivi4g02401 386 ProSitePatterns Oxysterol-binding protein family signature. 137 147 IPR018494 -
Vivi4g02401 386 FunFam Oxysterol-binding protein-related protein 4B 306 378 - -
Vivi4g02401 386 Gene3D - 306 378 - -
Vivi4g02401 386 Gene3D - 121 296 - -
Vivi4g02401 386 FunFam Oxysterol-binding protein-related protein 4C 120 298 - -
Vivi4g02401 386 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 39 359 IPR000648 GO:0008289
Vivi4g02401 386 Coils Coil 329 349 - -
Vivi4g02401 386 SUPERFAMILY Oxysterol-binding protein-like 38 371 IPR037239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02401 Vivi-Chr4 117947422 117955058 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02401 K22285 - gmx:100813724 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02401 4 117947422 117955058 Vivi4g02401 4 117947422 117955058 ECH
Vivi1g00611 1 13395743 13398844 Vivi4g02401 4 117947422 117955058 PCT