Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02395 ATGCAGCAAGCTGTGGTGGATCCATTGTTATCGCCGATTTTGAGCTCCGATTCTGCTTCTCAGAGATCGGCGCCGGAGAAGCCGCGATTCAGTGATCTTAGAGGTTTGCAGTGGCGTATCAATCTTGGAGTTTTGCCGTCTTCTTCTGCGGCTTCCATTGATGATCTTCGTCGAGTTACTGCGGATTGTAGAAGGAGGTACGCAAGTTTGAGAAGGCGCCTCCTTGCCGAAGCCCCTTCTCCAAAGAATGGAACTAACTCACGGAATCTTGTCATGGACAATCCACTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTCCGCAACGCAGAGCTAGAAAGATTGGTTGATCAAGATTTGTCACGTTTATACCCAGAACATGACAGTTATTTCCAATCACTAGGATGCCAAGGCATGTTGAGACGCATTTTATTGCTATGGTGTCTCAAGCACCCAGAATGTGGTTATAGACAAGGAATGCATGAATTAATGGCTCCTCTGCTTTATGTTCTCCAAGTTGATTTGGAACGTCTCTCAGAAGTTCGGAAGCTTTATAAAGATCACTTTACAGACCGGTTTGATATTCTTTTATGTCAAGAGCATGATCTTAATTACAGCTTTGATTTTAGGAAATCCCCAGACATGATGGAGGATGAAATCGGATCCCATGTAAATGCAATGAAAGCAGGCAGTCTTGACGAACTTGAACCCGAGATACAGTCCATTGTATTACTAAGTGATGCATATGGAGCTGAAGGTGAACTTGGCATCGTATTATCTGAGAAATTCATGGAACATGATGCTTACTGTATGTTTGATGCTTTAATGAAAGGGGCCAATGGTTCAGTTGCAATGGCGGATTTCTTCGTTTCATCTCCTGTAGCTAGCTCCCATACTGGCTTGCCTCCTGTGATTGAAGCTTCTATGGCGTTGTATCATTTGTTATCTCTTGCTGATTCTTCTCTTCATAACCATCTTTTGGATCTTGGGGTTGAACCGCAGTACTTTTATCTCCGGTGGTTGCGGGTTTTATTTGGACGAGAGTTTTCACTTGACAAATTACTTATCATTTGGGATGAGATCTTTGCATCAGATAATAGCAAAATAGAAAATAGTGCGGATGACAACATAGATTATGGCTTCAGGATCTTACATTCACCCCGCGGGGCATTTATCTCATCTATTGCTGTAGCAATGATACTTTATTTAAGGTCTTCTCTACTTGCAACTGAAAATCCAACAACCTGTCTCCAGAGACTACTCAACTTCCCCGAAAACATCACTATTGAAAAAATACTAAAGAAGGCTAAATCCTTGCAGGATCTTGCTTTAAGTATTGATATTTCATCCTCGTCACATTTGCTTTTGGGCTCTCGTTACCAAAGTAAAACGACATCTACGAGATCTGTGACCCTTCCGTCTGAATCTGTGTCACCGAAAACTCCTCTGAATTTTATACCCGATAGCTACTGGGAAGAAAAGTGGAGAAACGCCCAAAAGGCCGAAGCCCAAAAGGCCGAAGAACGTAAACAAGATGGTGCAAAAAATCAGGTTCCAACTCGGAAGAAAGGATGGACAGAAAAGATGAAATTACGTTTGAGAAGAACAGAATCTGACCCACCTCCATCAAGGGTTCTAAGCGGGCAAAGAGGATCTAAACCATCGTTTAGACGCAGTTTGTTAGAAGATCTGCGTAAAGCACTTGGCGCTGAGGAAAACACAGAACATGAGCAGCATCATGATGAAATCATAAGTGAACAGGATAATCTTTCTGAAGCAGTTGAAGTAGAGCGACAAGATAGTGGCAGTAATAGTGACAACAACTACTCATCTGATGATAAATGTCCAAGCAGAAATTCTGGCCGCGATGGAGATTCGTCTATATATTCTGACTCTGTCAGTCCTCCTAATGAGGCCAATGATACTGAAATTGCCTCAGAAAAAAATAGTGCTACATCTTTTTTATCCCTTGACGAATGTAATGAAACTTCAGATACCTGTCATATTGATTCACCTCTTCCAATCTCTGATCCTCCCGAGAACATGCCTCCAACGTCAGAATGCAATAATGATAATCAAGGAAATCATCAATGCAATGAAACTTCAGATACCATCCCTTGTGATTCACCCTCTCCAGTCTCTGATCCTCCTCAGAACTTACCTGAGACATCAGGATGCGATAACGACGATGCAGGAAGCTCATCCACAGCCCCTAAAGAGAGAAAACAGAATAAATTCCAGTGGTTTTGGAATTTTGGACGGAATACCGTTGATGTTAACTCTGAGAAAGTAGGAGGTGCTGCCGAGGCTACGAAGTCTGCCAACAATAATAGCAATCAAAGTAACTCATCACCGCCACCAGCCTCACCTGCTGTTAATGGACATTGTAGTTCTGTTAGTTCCAGAGGAGATTCTGTTGATCAAAATGTGATGGGAACTTTAAAGAATATTGGGCAGTCTATGCTTGACCATATTCAGGTGATTGAGTCTGTTTTCCAACCGGATCGAGGCCAGGGAGCCTCGTCGGACAATTTATCCAAGAACATTCTAGTTGGAAAAGGGCAGGTTACTGCCATGACCGCACTAAAGGAGCTTCGGAAAATCAGCAACCTTTTGTCTGAGATGTGA 2631 0.4261 MQQAVVDPLLSPILSSDSASQRSAPEKPRFSDLRGLQWRINLGVLPSSSAASIDDLRRVTADCRRRYASLRRRLLAEAPSPKNGTNSRNLVMDNPLSQNPDSTWSRFFRNAELERLVDQDLSRLYPEHDSYFQSLGCQGMLRRILLLWCLKHPECGYRQGMHELMAPLLYVLQVDLERLSEVRKLYKDHFTDRFDILLCQEHDLNYSFDFRKSPDMMEDEIGSHVNAMKAGSLDELEPEIQSIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMKGANGSVAMADFFVSSPVASSHTGLPPVIEASMALYHLLSLADSSLHNHLLDLGVEPQYFYLRWLRVLFGREFSLDKLLIIWDEIFASDNSKIENSADDNIDYGFRILHSPRGAFISSIAVAMILYLRSSLLATENPTTCLQRLLNFPENITIEKILKKAKSLQDLALSIDISSSSHLLLGSRYQSKTTSTRSVTLPSESVSPKTPLNFIPDSYWEEKWRNAQKAEAQKAEERKQDGAKNQVPTRKKGWTEKMKLRLRRTESDPPPSRVLSGQRGSKPSFRRSLLEDLRKALGAEENTEHEQHHDEIISEQDNLSEAVEVERQDSGSNSDNNYSSDDKCPSRNSGRDGDSSIYSDSVSPPNEANDTEIASEKNSATSFLSLDECNETSDTCHIDSPLPISDPPENMPPTSECNNDNQGNHQCNETSDTIPCDSPSPVSDPPQNLPETSGCDNDDAGSSSTAPKERKQNKFQWFWNFGRNTVDVNSEKVGGAAEATKSANNNSNQSNSSPPPASPAVNGHCSSVSSRGDSVDQNVMGTLKNIGQSMLDHIQVIESVFQPDRGQGASSDNLSKNILVGKGQVTAMTALKELRKISNLLSEM 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02395 876 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 302 441 IPR035969 -
Vivi4g02395 876 FunFam TBC1 domain family member 5 305 449 - -
Vivi4g02395 876 MobiDBLite consensus disorder prediction 498 540 - -
Vivi4g02395 876 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 97 282 - -
Vivi4g02395 876 MobiDBLite consensus disorder prediction 597 671 - -
Vivi4g02395 876 MobiDBLite consensus disorder prediction 683 710 - -
Vivi4g02395 876 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 31 437 - -
Vivi4g02395 876 MobiDBLite consensus disorder prediction 498 558 - -
Vivi4g02395 876 MobiDBLite consensus disorder prediction 719 743 - -
Vivi4g02395 876 MobiDBLite consensus disorder prediction 78 97 - -
Vivi4g02395 876 Coils Coil 497 517 - -
Vivi4g02395 876 MobiDBLite consensus disorder prediction 80 97 - -
Vivi4g02395 876 MobiDBLite consensus disorder prediction 766 809 - -
Vivi4g02395 876 SMART tbc_4 25 412 IPR000195 -
Vivi4g02395 876 MobiDBLite consensus disorder prediction 571 743 - -
Vivi4g02395 876 Pfam Rab-GTPase-TBC domain 265 366 IPR000195 -
Vivi4g02395 876 Pfam Rab-GTPase-TBC domain 113 173 IPR000195 -
Vivi4g02395 876 MobiDBLite consensus disorder prediction 571 596 - -
Vivi4g02395 876 ProSiteProfiles TBC/rab GAP domain profile. 28 366 IPR000195 -
Vivi4g02395 876 Gene3D - 305 448 - -
Vivi4g02395 876 MobiDBLite consensus disorder prediction 771 809 - -
Vivi4g02395 876 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 32 326 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02395 Vivi-Chr4 117259839 117264311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02395 K18469 - gmx:100812967 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02395 4 117259839 117264311 Vivi4g02395 4 117259839 117264311 ECH
Vivi1g00615 1 13437926 13442645 Vivi4g02395 4 117259839 117264311 PCT