Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00615 ATGCCGCCGGCCGTGTTGCATCCGCCATTGTCCAAATCATCGTCGGTACATTCATTATCCTCCGAGGCCATTTTCTACGAACCTGCTCCGGAGAGTCGGCAATTCGACGATCTTAGAGGTTTGCAGTGGCGTATAAACCTTGGGGTTTTGCCTTCTTCTTCTTCCTCTTCTTCAACTTTCATTGATGATCTTCGTCGCGCAACCGCTAATTCTCGAAGGAGGTATGCTAGTTTGAGAGGGCGGCTCCTGGTTGATCCTCATATTAAAATGGATGGAACTAGTTCGCCCAATCTTGTCATGGACAACCCACTTTCGCAAAATCCAAATAGTACATGGGGTCGATTTTTTCACAATGCGGAGATGGAGAGGATGGTGGATCAGGATCTATCACGCTTATACCCGGAACATGGGAACTATTTCCAGACAAAAGGGTGCCAAGGCATATTGAGACGAATTTTACTATTATGGTGTCTTAGACACCCCGAGTATGGTTATAGACAAGGAATGCACGAGTTACTCGCTCCTTTGCTTTATGTTCTCCAAGTTGATGTGGAGCACCTTTTGGAAGTTCGAAAACTTTATGAAGATCACTTCACAGACAGATTTGATGATCTCCTTTGCCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAAAAAATCTTCAGACTTGACGAATGATGAAATTGGCTCCCATGGAAAAGAAATGAAAATCAAGAGTCTTGACGAGCTTGATCCTAAGATACAGACCATTGTATTGCTAAGTGACGCTTATGAAGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATTGAGCATGATGCTTACTGCATGTTTGAAGCCTTAATGGATGGTGCTCACGGTTCAGTTGCAATGGCCGAATTTTTCTCTTATTCCCCTGTTCCCGGGTCCCATACTGGTTTGCCACCTGTAATTGAAGCTTCCACTGCATTGTATCATTTGTTGTCTCATGTGGATTCATCTCTGTATAGCCATCTTGTTGATCTCGGGGTTGAACCACAGTACTTTGCTCTCCGCTGGTTGAGAGTTTTATTTGGACGAGAATTTTCACTTGAGAACCTCTTGACCATCTGGGATGAAATCTTTTTATCAGACAATAGTAAAATAGAAAAGCTCGCGGAGGACAATGCAGACAATGGCTTAAGTATCTTTCACTCGTGTCGTGGAGCATTTATCTCAGCTATTGCTGTGGCAATGTTACTTCATATAAGATCTTCGCTACTTGCGACTGAAAATCCTACGATTTGTCTCCAGAGATTATTAAGCTTCCCTGAGAACACAAACATTCAAAAACTAATAGAGAAGGCTAAATCCTTGCAGACTCTTGCATTAAGTCCTGAAATTGCATCCTCGACACCTGTACTTGTAGAGTATCACAACAACGGTAAATCAGTAATTGCAAGATCTGTTTCCATTCCAATTGAATCAGGTTCACCAAAAACTCCTAAGAATTTTCAACCTGATAATAGCTACTGGGAAGAAAAGTGGCGAGTTGTCCACAGTGCTGAAGAACTTAAACAAGATGGAGTAGAAAAGCAGGTTCCATCTCAGAAGAAGAGATGGACAGAAAAGGTAAAGTTAAGTTTGAAAAGAACAGAATCCGAACCATCTTCATCAACTACTAAGAGTGGTAAAGGGGAATCTAAGACATCTGCTAAACGGAGTTTATTAAAAGATCTTTCCAAGGAACTTCGGTTAGAAGAAGAAGATACAGAAAAACTCGACAGTCATGAAATCTTATGCCAGCAGGATAATCATTCAGTAGCAGTTGAAGTAGAGAAACAAGATGATACCTCTACTTACGGTGCTGACGATAGACTTCCAAGTAAAAACACTGGCAGGGAGGAACACTCATTTAGCCCAGCCAGTCCTCCTAATGAGATCAAAGATCATGAAAATAAAACTGTCTCACCGAAAAGTAATGTTGGGTCTAATTTATCCATTGATGTTATTAGTGAAATTTTAAATAGTAGTCCCGTTGATTCGCCTCTTCCAATCTCCGATCATCCTGAGAATAACCTATCTCCGGCGCCAGGGCGCAATAATGATTCCACAGGAAATTCGGCCACACTTTCTAGGGATATAAAACTGAATAAATTCCAGTGGCTTTGGAAGTTTGGTCGTAAGAACATCGAGTTAGTGTCCGAGAAAAGAGGGCGTGCTTCTGAGCCTGTAAAGCCGACCAACAATTGTAATAATCAAAGTACCACAGTACCCTCGTCTATAGCGTGTGAGAATTGCAGCTCTGTTAACTTAAAAGGAGATTCTCCTGACCAAAATGTGATGGGAACTTTGAGGAATATTGGGCAGTCCATGCTTGAGCATATTCAGGTGATTGAGTCTGCTTTCCAACAAGAGTGTGGTCAGGGAGATTCATTGGATAATAATAATACATCTAAAGATGATCTGGTTGGCAAAGGGCAGGTTACCGCCATGTCGGCTCTCAAGGAGCTGCGCAAAATTAGCAACCTTTTGTCTGAAATGTGA 2514 0.4181 MPPAVLHPPLSKSSSVHSLSSEAIFYEPAPESRQFDDLRGLQWRINLGVLPSSSSSSSTFIDDLRRATANSRRRYASLRGRLLVDPHIKMDGTSSPNLVMDNPLSQNPNSTWGRFFHNAEMERMVDQDLSRLYPEHGNYFQTKGCQGILRRILLLWCLRHPEYGYRQGMHELLAPLLYVLQVDVEHLLEVRKLYEDHFTDRFDDLLCQENDLSYSFDFKKSSDLTNDEIGSHGKEMKIKSLDELDPKIQTIVLLSDAYEAEGELGIVLSEKFIEHDAYCMFEALMDGAHGSVAMAEFFSYSPVPGSHTGLPPVIEASTALYHLLSHVDSSLYSHLVDLGVEPQYFALRWLRVLFGREFSLENLLTIWDEIFLSDNSKIEKLAEDNADNGLSIFHSCRGAFISAIAVAMLLHIRSSLLATENPTICLQRLLSFPENTNIQKLIEKAKSLQTLALSPEIASSTPVLVEYHNNGKSVIARSVSIPIESGSPKTPKNFQPDNSYWEEKWRVVHSAEELKQDGVEKQVPSQKKRWTEKVKLSLKRTESEPSSSTTKSGKGESKTSAKRSLLKDLSKELRLEEEDTEKLDSHEILCQQDNHSVAVEVEKQDDTSTYGADDRLPSKNTGREEHSFSPASPPNEIKDHENKTVSPKSNVGSNLSIDVISEILNSSPVDSPLPISDHPENNLSPAPGRNNDSTGNSATLSRDIKLNKFQWLWKFGRKNIELVSEKRGRASEPVKPTNNCNNQSTTVPSSIACENCSSVNLKGDSPDQNVMGTLRNIGQSMLEHIQVIESAFQQECGQGDSLDNNNTSKDDLVGKGQVTAMSALKELRKISNLLSEM 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00615 837 ProSiteProfiles TBC/rab GAP domain profile. 33 374 IPR000195 -
Vivi1g00615 837 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 310 449 IPR035969 -
Vivi1g00615 837 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 36 334 IPR035969 -
Vivi1g00615 837 MobiDBLite consensus disorder prediction 594 652 - -
Vivi1g00615 837 Coils Coil 566 586 - -
Vivi1g00615 837 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 108 290 - -
Vivi1g00615 837 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 32 429 - -
Vivi1g00615 837 MobiDBLite consensus disorder prediction 517 540 - -
Vivi1g00615 837 Gene3D - 313 455 - -
Vivi1g00615 837 MobiDBLite consensus disorder prediction 683 699 - -
Vivi1g00615 837 Pfam Rab-GTPase-TBC domain 122 181 IPR000195 -
Vivi1g00615 837 Pfam Rab-GTPase-TBC domain 274 375 IPR000195 -
Vivi1g00615 837 MobiDBLite consensus disorder prediction 598 622 - -
Vivi1g00615 837 MobiDBLite consensus disorder prediction 541 555 - -
Vivi1g00615 837 SMART tbc_4 30 420 IPR000195 -
Vivi1g00615 837 MobiDBLite consensus disorder prediction 668 699 - -
Vivi1g00615 837 MobiDBLite consensus disorder prediction 517 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00615 Vivi-Chr1 13437926 13442645 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00615 K18469 - gmx:100816501 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00615 1 13437926 13442645 Vivi1g00615 1 13437926 13442645 ECH
Vivi1g00615 1 13437926 13442645 Vivi4g02395 4 117259839 117264311 PCT