Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02362 ATGGCCACCATCGAACCACCACAAAACGGCACCGCCACCGCCACCATCACCGCCTCAAACCCACTCCCACCGGACAATCCCTCCGCCGCACAACCCCTCACCACTGACACCGACGCAACTGCCGTTATTAACTCATCCTCAATCGTCAACGAATCGGCTCAAGAGACGGAGACGGTAGCCGAAACCGGAACAGAACCCACCGTCACTCCGCCGGAGAAGAGATGGTCAGGTTGGCCGGGGGACTGCGTGTTCCGTCTCATAGTTCCCGTTGGTAAGGTTGGTAGCATCATTGGACGTAAGGGGGAACTCATCAAGAAGCTCTGTGAAGAAACTAAAGCTCGTGTTCGTGTTCTTGATGCTGATCACGGTACTCCTGATCGAGTTATACTTATATCAGGGAAGGAAGAGCTAGAATCAGCTATATCCCCTGCAATGGATGCTGCAATAAGGATATTCAAACGCGTTTCTGGATTATCTGAAATTGACAGTGAAGTTAAAAATTCTGCTGGGGTTACAGCTTGTTCCATTCGATTATTGGTGCCATCAACACAGGCTATCAGTTTGATTGGAAAGCAAGGGTCACTAATCAGATCCATACAAGAGAGTTCTAGTGCCTCTGTTAGAGTACTGTCAGTAGATGAGGTGCATTATTTTGCTACTGCGGAAGAGAGGATCGTAGACCTGCAGGGAGAAGCCTTGAACGTCCTTAAAGCTCTTGAAGCCGTGATTGGCCATCTGAGGAAGTTTTTGGTTGATCACAGTGTTGTCCCCCTATTTGAGAAAACTTACAATGCGTCTATCACACAACAAGAGCGTCAAGCTGAGACCTGGTCTGATAAGCCGTCACTGAATACCATTTCACAAACTAGCATGTTTTCTGATATTCCGCTTCCTTCAAAAAGGGATTCTGTCTTCGCTGATCGGGAAAGTCATTTGGACTCACTACTCTCATCCTCCTCTATGCCTCACTATGGGCAAGATTCTTCTCTTTCTGGTGTCCGTTCTTCGACTCTTAGTCGTGTTGGGGCTCCTATTGTTACGACGGTAATACAAACAATGCAAATACCACTATCCTATGCGGAGGACATCATTGGCATTCAAGGGACTAATATAGATTATATTCGCCGCACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATCGTTGTGGAAATAAAAGGAACATCATCCCAGGTTCAAACAGCTCAGCAATTGATTCAGGAAGTTATAAGCAGTCGCAGAGAACCTATCACCAACAGCTACGGGAGGTTGGATGCGAGCAGAATGGATGCGGGTCCAAGGTCTTATTCTCAGTCTTCTTACTCTCAGTTGGGCAATTCATCACGCATCCCACCTTCATTGCCCTCACAGCCATACTCAAGTTATGGAGCATCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1443 0.474 MATIEPPQNGTATATITASNPLPPDNPSAAQPLTTDTDATAVINSSSIVNESAQETETVAETGTEPTVTPPEKRWSGWPGDCVFRLIVPVGKVGSIIGRKGELIKKLCEETKARVRVLDADHGTPDRVILISGKEELESAISPAMDAAIRIFKRVSGLSEIDSEVKNSAGVTACSIRLLVPSTQAISLIGKQGSLIRSIQESSSASVRVLSVDEVHYFATAEERIVDLQGEALNVLKALEAVIGHLRKFLVDHSVVPLFEKTYNASITQQERQAETWSDKPSLNTISQTSMFSDIPLPSKRDSVFADRESHLDSLLSSSSMPHYGQDSSLSGVRSSTLSRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIVVEIKGTSSQVQTAQQLIQEVISSRREPITNSYGRLDASRMDAGPRSYSQSSYSQLGNSSRIPPSLPSQPYSSYGASGLGDYSTFRL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02362 480 CDD KH-I_PEPPER_rpt1_like 81 147 - -
Vivi4g02362 480 CDD KH-I_PEPPER_rpt2_like 177 247 - -
Vivi4g02362 480 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 71 442 - -
Vivi4g02362 480 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 344 417 IPR036612 GO:0003723
Vivi4g02362 480 MobiDBLite consensus disorder prediction 437 466 - -
Vivi4g02362 480 Gene3D K Homology domain, type 1 347 421 IPR036612 GO:0003723
Vivi4g02362 480 Gene3D - 81 250 - -
Vivi4g02362 480 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 75 136 IPR036612 GO:0003723
Vivi4g02362 480 ProSiteProfiles Type-1 KH domain profile. 173 242 - -
Vivi4g02362 480 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 174 257 IPR036612 GO:0003723
Vivi4g02362 480 ProSiteProfiles Type-1 KH domain profile. 81 148 - -
Vivi4g02362 480 SMART kh_6 172 247 IPR004087 GO:0003676
Vivi4g02362 480 SMART kh_6 347 416 IPR004087 GO:0003676
Vivi4g02362 480 SMART kh_6 80 153 IPR004087 GO:0003676
Vivi4g02362 480 ProSiteProfiles Type-1 KH domain profile. 348 411 - -
Vivi4g02362 480 MobiDBLite consensus disorder prediction 425 466 - -
Vivi4g02362 480 MobiDBLite consensus disorder prediction 48 65 - -
Vivi4g02362 480 MobiDBLite consensus disorder prediction 48 74 - -
Vivi4g02362 480 Pfam KH domain 84 140 IPR004088 GO:0003723
Vivi4g02362 480 Pfam KH domain 176 242 IPR004088 GO:0003723
Vivi4g02362 480 Pfam KH domain 351 413 IPR004088 GO:0003723
Vivi4g02362 480 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02362 Vivi-Chr4 116875676 116881249 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02362 K21444 - gmx:100815466 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02362 4 116875676 116881249 Vivi4g02362 4 116875676 116881249 ECH
Vivi1g00622 1 13587010 13591501 Vivi4g02362 4 116875676 116881249 PCT