Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00622 ATGGCCACCGCCGACCTAATCCCGAACGGAACTTTACAATTGCAACCACCAGTCGAACCAATTCCGGACGCCGTCAACCCTCCGGCAACCGAGGAAACAGATTCCGAAGAGAAGAAATGGCCGGGTTGGCCAGGTCATTGCGTTTTCCGGCTGATTGTGCCGGTCCTTAAAGTCGGGATCATAATCGGCCGCAAAGGGGAGCTTATCAAGAAGACTTGCGAAGAGACTCGTGCTCGGATTCGTGTTCTCGATGCTCCACTTGGTACTCCGGATCGAATTGTGCTTATATCGGGGAAGGAAGATTTGGAGGCGCCTTTTTCTCCTGCAATGGATGCTGTAATAAAGATTTTTAAACGTGTCTCCGGATTAAGTGCAACTGATGACAATAATGCAACATCAGAAGTTGCAGGAGCTGCATTTTGTTCCATCCGTTTATTGGTGGCCTCAACACAAGCTATCAATTTGATAGGAAAGCAGGGTTCGTCAATTAAAACTATACAAGAAAATACCGGTGCTTCTGTTAGAGTTTTATCTGGAGAGGATCTTCCATCGTATGTCGGTGCCGATGAGAGGATTGTGGAACTGCATGGAGAAACCTTAAAGGTCCTAAAAGGTCTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGATCATAGCGTTCCTCCCCTATTTGAGAAAACTTGCAATGCAACAATCTCACAAGACCGCCAGACAGATGCTTGGGCAGAGAAACAGTCACTGCGTAGTGCTTCACAACCTAGCATTGTTTCTGATATTCCTCCTTCAACAAAAAGGGATTATTTCTTTGCAGACCGTGAAAGTCAATTGGATTCATTGCTCTCTTCCTCAACAATGTCACAATATGGACAAGATTCTTCAATTTCTGGTCTTCGTTCTTCGGCATATAATCGTGCTAGTGCTTCCATTGTTACTACCGTAATACAAACAATGCAAATACCACTTTCCTATGCAGAGGACATAATTGGTGTTCAAGGGACTAATATCGATTACATTCGCCGTACTAGTGGTGCCATATTGACTGTGCAGGAGAGCAGAGTGCCAGATGAAATCATTGTGGAAATAAAAGGCACCTCCTCTGAAGTTCAAACAGCACAGCAATTGATTCAGGAAGTCATAGCTAATCGCAACGAAACTATCGCTAGTAGTTATGGCAGGTTAGATTCAGGACTGAGGTCTTCTTACTCCCACTTGAACAACTCTTCCTATCCCTCATCTTCCTTGCCATCATCGCAATCGTACAACGGGTATGGATCTTCTGGTCTAGGAGGGGACTATAGTACTTTCAGACTTTAA 1320 0.4492 MATADLIPNGTLQLQPPVEPIPDAVNPPATEETDSEEKKWPGWPGHCVFRLIVPVLKVGIIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLISGKEDLEAPFSPAMDAVIKIFKRVSGLSATDDNNATSEVAGAAFCSIRLLVASTQAINLIGKQGSSIKTIQENTGASVRVLSGEDLPSYVGADERIVELHGETLKVLKGLEAVVGHLRKFLVDHSVPPLFEKTCNATISQDRQTDAWAEKQSLRSASQPSIVSDIPPSTKRDYFFADRESQLDSLLSSSTMSQYGQDSSISGLRSSAYNRASASIVTTVIQTMQIPLSYAEDIIGVQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSEVQTAQQLIQEVIANRNETIASSYGRLDSGLRSSYSHLNNSSYPSSSLPSSQSYNGYGSSGLGGDYSTFRL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00622 439 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 35 409 - -
Vivi1g00622 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 307 383 IPR036612 GO:0003723
Vivi1g00622 439 ProSiteProfiles Type-1 KH domain profile. 140 209 - -
Vivi1g00622 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 133 220 IPR036612 GO:0003723
Vivi1g00622 439 MobiDBLite consensus disorder prediction 1 39 - -
Vivi1g00622 439 Gene3D K Homology domain, type 1 141 216 IPR036612 GO:0003723
Vivi1g00622 439 SMART kh_6 139 214 IPR004087 GO:0003676
Vivi1g00622 439 SMART kh_6 45 118 IPR004087 GO:0003676
Vivi1g00622 439 SMART kh_6 313 382 IPR004087 GO:0003676
Vivi1g00622 439 CDD KH-I_PEPPER_rpt1_like 46 114 - -
Vivi1g00622 439 Gene3D K Homology domain, type 1 46 120 IPR036612 GO:0003723
Vivi1g00622 439 ProSiteProfiles Type-1 KH domain profile. 46 113 - -
Vivi1g00622 439 Gene3D K Homology domain, type 1 304 390 IPR036612 GO:0003723
Vivi1g00622 439 CDD KH-I_PEPPER_rpt2_like 144 214 - -
Vivi1g00622 439 ProSiteProfiles Type-1 KH domain profile. 314 377 - -
Vivi1g00622 439 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 40 100 IPR036612 GO:0003723
Vivi1g00622 439 Pfam KH domain 49 101 IPR004088 GO:0003723
Vivi1g00622 439 Pfam KH domain 143 204 IPR004088 GO:0003723
Vivi1g00622 439 Pfam KH domain 317 379 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00622 Vivi-Chr1 13587010 13591501 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00622 K21444 - gmx:100802089 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00622 1 13587010 13591501 Vivi1g00622 1 13587010 13591501 ECH
Vivi1g00622 1 13587010 13591501 Vivi4g02362 4 116875676 116881249 PCT