Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02322 ATGTTTGAACAACAACACTTTCAACTTCACGGTCACCATAACCAGCTTACGGTGAAGATGAATAATACAGTGAAAAGAAGAGAAATGAAAAATCCTAAAGAAGAGAAGCTTCAAGTTATGGACTTGAGTGGCATGTCCTTGGATTCACTTCCAAAATCTTCACTTCATTTAGCCCTCGTTTCTAAGCTTGACCTATCTAATAACAATCTAAAGAATATTCCGGAGTCGTTAACTGCGAGATTATTGAACTTAGAGATGTTAGACGTGCACTCCAACCAGCTCAAATCTCTCCCAAATTCCATTGGTTGTCTCTCCAAGCTCCAAGTTTTGAATGTCTCTGCCAACTTCATTGAATCTCTTCCTGCAACCATTGAGAATTGCAGAGCTTTGGAAGAATTGAATGTGAACTTCAACGAGTTGAGCATGCTGCCAGACACAATAGGCTTCGAGCTCATAAAACTCAAGAAACTTTCTGTCAACTCCAACAAACTGGTATTTCTTCCTAGCTCCACCTCTCACCTTACGGCTCTTAAGGTTCTCGACGCGCGTTTGAACTGCCTCAGGAGTCTCCCCGACAACCTCGAGAATCTCATCAATCTTGAAACCCTAAATGTGAGTCAGAACTTTCAATACTTGGAGTCCCTGCCATATTCCATAGGGCTCCTCTTGTCATTGGTTGAATTGGACATTAGCTACAACAGTATCAAAACATTGCCTGACTCCATTGGGTGCCTCCAGAAGCTTCAAAAGCTAAGCGTTGAGGGAAACCCGCTTAGTTCGCCTCCACCTGAGGTGGTGGAGCAAGGATTGCATGTGGTGAAGGAGTATATGTGCCACAAAATGAACTCGGGCAATAAAGTTTCAACCAAGAAGAGATGGTGGATGGTGAAATGTGGAACCTTCAATGGGCACAATAGAAGTGGGAAACACACAGATCACAGAGGTTTTAGCATGCTTCAATATCAGCCAATGAATGGTCTTGCAACACCAGGCTTCATGGGAAAGTTGTCACCTCTTCGCCTATTCTCACCCCGCCGTTCTTTCAATTAA 1050 0.4333 MFEQQHFQLHGHHNQLTVKMNNTVKRREMKNPKEEKLQVMDLSGMSLDSLPKSSLHLALVSKLDLSNNNLKNIPESLTARLLNLEMLDVHSNQLKSLPNSIGCLSKLQVLNVSANFIESLPATIENCRALEELNVNFNELSMLPDTIGFELIKLKKLSVNSNKLVFLPSSTSHLTALKVLDARLNCLRSLPDNLENLINLETLNVSQNFQYLESLPYSIGLLLSLVELDISYNSIKTLPDSIGCLQKLQKLSVEGNPLSSPPPEVVEQGLHVVKEYMCHKMNSGNKVSTKKRWWMVKCGTFNGHNRSGKHTDHRGFSMLQYQPMNGLATPGFMGKLSPLRLFSPRRSFN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02322 349 PANTHER - 81 269 - -
Vivi4g02322 349 SMART LRR_bac_2 104 123 - -
Vivi4g02322 349 SMART LRR_bac_2 197 218 - -
Vivi4g02322 349 SMART LRR_bac_2 127 146 - -
Vivi4g02322 349 SMART LRR_bac_2 57 76 - -
Vivi4g02322 349 SMART LRR_bac_2 151 170 - -
Vivi4g02322 349 SMART LRR_bac_2 81 100 - -
Vivi4g02322 349 SMART LRR_bac_2 222 241 - -
Vivi4g02322 349 SMART LRR_bac_2 174 193 - -
Vivi4g02322 349 Pfam Leucine rich repeat 61 115 IPR001611 GO:0005515
Vivi4g02322 349 Pfam Leucine rich repeat 199 258 IPR001611 GO:0005515
Vivi4g02322 349 SMART LRR_typ_2 104 127 IPR003591 -
Vivi4g02322 349 SMART LRR_typ_2 57 80 IPR003591 -
Vivi4g02322 349 SMART LRR_typ_2 81 103 IPR003591 -
Vivi4g02322 349 SMART LRR_typ_2 128 150 IPR003591 -
Vivi4g02322 349 SMART LRR_typ_2 151 173 IPR003591 -
Vivi4g02322 349 SMART LRR_typ_2 245 268 IPR003591 -
Vivi4g02322 349 SMART LRR_typ_2 174 197 IPR003591 -
Vivi4g02322 349 SMART LRR_typ_2 222 244 IPR003591 -
Vivi4g02322 349 Gene3D Ribonuclease Inhibitor 2 145 IPR032675 -
Vivi4g02322 349 Gene3D Ribonuclease Inhibitor 146 277 IPR032675 -
Vivi4g02322 349 ProSiteProfiles Leucine-rich repeat profile. 224 245 IPR001611 GO:0005515
Vivi4g02322 349 SUPERFAMILY L domain-like 33 263 - -
Vivi4g02322 349 ProSiteProfiles Leucine-rich repeat profile. 83 104 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02322 Vivi-Chr4 114984636 114987690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02322 63 338 Receptor kinase-like Gene Family AT5G51350 30.345 6.52e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02322 - - lja:Lj6g3v1315120.1 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02322 4 114984636 114987690 Vivi4g02322 4 114984636 114987690 ECH
Vivi1g00646 1 13920535 13922311 Vivi4g02322 4 114984636 114987690 PCT