Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00646 ATGATGTACGAACAGCAACCGGTGGAGAGGACCACATATAGTAATAATTCGAATTCCATTGAGGAAACTGAAAGGCTTGAAATAGTTAACTTGAGTGGCATGTCATTAGACTCTCTTCCTAACCCTTCTCTCAATTTAGCTTCCATTTGCAAGTTAGACCTATCCAATAACAATCTTCAGAACATTCCGGAATCATTGACGGCGAGGCTGGTGAACACGGTGGCGTTGGACGTGCACTCAAACCAGCTGAGAACCCTTCCAAACTCCATTGGCTGCCTCTCCAAGCTCAAGCTTCTGAACGTCTCCGGCAACCTCATCCAACACCTCCCAAAAACAATTGAGAATTGCAAGGCCTTAGAAGATTTGAATTTAAACTTCAACAAGTTGATCCAATTACCAGAAAACCTAGGGTTTGAGCTAATAAACCTCAAGAAACTATCAATCAACTCCAACAAACTTCTCTTCCTTCCACGCTCCATCTCTTATCTCACATCTCTCAAGATTCTCGACGCACGTCTCAACTGTCTCAGATCTCTCCCGGAAGATCTAGAGAATCTCATCAACCTTGAAACCCTAAACGTGAGTCAGAATTTTCATTTCTTGGATTCAATTCCATCCTCCATAGGACTTCTATTGTCTCTCGTTGAACTTGACATCAGCTACAACAAGATCAAGTCCTTGCCGGACTCCATTGGTGGTCTCAATAAGCTTCAGAAGCTGAGTGTGGAAGGGAACCCTCTTACTTCACCACCACCGGAAGTGATGGAGCTTGGATTGCATGCAGTGAAGGAGTATCTCGGCAACAAGATGAACGCTGGCCATCAGAGTCCGACACCGATGAAGAGTCCAACTAAGAAGAAGTCATGGGTTGGAAGATTGGTTAAATATGGAAGCTTCAATATCCGAAATGGACCACGTGAAGAACGCGAAGCTTTCATCGTTTCTGATGATGATAGATCGATCGAAAGTGTTGCTTCAACTCGCTATTCGGGGATGTTTTCGCCCCGTCGTCTCTTCTCCGGTCGGAATTACTTTAGCCATTGA 1044 0.4454 MMYEQQPVERTTYSNNSNSIEETERLEIVNLSGMSLDSLPNPSLNLASICKLDLSNNNLQNIPESLTARLVNTVALDVHSNQLRTLPNSIGCLSKLKLLNVSGNLIQHLPKTIENCKALEDLNLNFNKLIQLPENLGFELINLKKLSINSNKLLFLPRSISYLTSLKILDARLNCLRSLPEDLENLINLETLNVSQNFHFLDSIPSSIGLLLSLVELDISYNKIKSLPDSIGGLNKLQKLSVEGNPLTSPPPEVMELGLHAVKEYLGNKMNAGHQSPTPMKSPTKKKSWVGRLVKYGSFNIRNGPREEREAFIVSDDDRSIESVASTRYSGMFSPRRLFSGRNYFSH 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00646 347 ProSiteProfiles Leucine-rich repeat profile. 213 234 IPR001611 GO:0005515
Vivi1g00646 347 PANTHER LEUCINE-RICH REPEAT-CONTAINING 121 253 - -
Vivi1g00646 347 SMART LRR_bac_2 211 230 - -
Vivi1g00646 347 SMART LRR_bac_2 46 65 - -
Vivi1g00646 347 SMART LRR_bac_2 93 112 - -
Vivi1g00646 347 SMART LRR_bac_2 163 182 - -
Vivi1g00646 347 SMART LRR_bac_2 116 135 - -
Vivi1g00646 347 SUPERFAMILY L domain-like 20 256 - -
Vivi1g00646 347 Pfam Leucine rich repeat 188 247 IPR001611 GO:0005515
Vivi1g00646 347 SMART LRR_typ_2 70 92 IPR003591 -
Vivi1g00646 347 SMART LRR_typ_2 46 69 IPR003591 -
Vivi1g00646 347 SMART LRR_typ_2 234 257 IPR003591 -
Vivi1g00646 347 SMART LRR_typ_2 140 162 IPR003591 -
Vivi1g00646 347 SMART LRR_typ_2 163 186 IPR003591 -
Vivi1g00646 347 SMART LRR_typ_2 117 139 IPR003591 -
Vivi1g00646 347 SMART LRR_typ_2 211 233 IPR003591 -
Vivi1g00646 347 SMART LRR_typ_2 93 116 IPR003591 -
Vivi1g00646 347 ProSiteProfiles Leucine-rich repeat profile. 48 69 IPR001611 GO:0005515
Vivi1g00646 347 Gene3D Ribonuclease Inhibitor 6 277 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00646 Vivi-Chr1 13920535 13922311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00646 44 255 Receptor kinase-like Gene Family AT5G51350 33.937 4.29e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00646 - - cam:101513208 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00646 1 13920535 13922311 Vivi1g00646 1 13920535 13922311 ECH
Vivi1g00646 1 13920535 13922311 Vivi4g02322 4 114984636 114987690 PCT