Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02285 ATGACAATGGAGAGAAAGTTTGACATGGTTTTGGTTTTGTTGTTTTTGTGTTTTTGCGTTTGTTCTGTCACAGCCTCAGTGACTTATGATCACAAAGCTATTGTAATTAATGGTCAGAGAAGAATTTTGATCTCTGGTTCAATTCATTATCCAAGAAGCACTCCTCAGATGTGGCCAGATTTAATTCAAAAGGCCAAAGATGGAGGTGTTGATGTGATTGAAACATATGTATTTTGGAATGGGCATGAACCTTCTCAAGGAAATTATTACTTTGAAGATAGGTTTGATTTGGTTAAGTTTGTGAAAGTGGTACAACAAGCTGGACTATATGTTCACTTGCGTATCGGTCCCTATGTTTGCGCGGAATGGAATTTCGGGGGATTTCCTGTTTGGCTAAAGTATGTACCAGGTGTTGCTTTCAGAACAGACAACGAGCCGTTCAAGGCTGCAATGCAAAAATTCACTGCTAAGATTGTCAGTATTATGAAAGGTGAAAGATTGTTTCAAAGCCAAGGTGGTCCAATCATTTTGTCTCAGATTGAGAATGAGTATGGACCAGTGGAATGGGAGATTGGTGCTCCGGGAAAAGCTTATACGAAATGGGCAGCTCAAATGGCTGTGGGTCTAAACACGGGTGTACCGTGGATTATGTGCAAGCAAGAAGATGCTCCAGATCCTATTATTGATACCTGCAATGGATATTACTGCGAAAACTTCTCTCCCAACAAGAACTACAAACCCAAAATGTGGACTGAAAATTGGACTGGCTGGTACACTGATTTTGGTAGTGCTGTCCCTTATCGACCAGCAGAAGACTTGGCATTCTCAGTCGCCAGATTCGTACAGAATCGCGGATCTTATGTTAACTACTATATGTATCATGGAGGAACTAACTTTGGAAGAACAACTAGTGGCCTTTTCATAGCCACAAGCTACGACTACGATGCTCCTATCGATGAATACGGACTTACAAATGAACCAAAATGGGGGCATCTAAAAAATTTACATAAAGCGATAAAGCAATGCGAATCAGCTTTAGTGTCCGTGGATCCGACAGTGTCATGGCCTGGAAAAAACCTAGAGGTGCACCTTTACAAGACAAGCTTTGGTGCCTGTGCTGCCTTCCTTGCAAATTACGACACCTCATCGTGGGCAAAAGTTCCGTTCGGAAATGGCCATTACGACTTACCACCGTGGTCTATCAGTATCCTTCCTGACTGTAAAACTGAGGTTTTCAACACTGCAAAGGTTAATGCTCCGAGGTTCCATAGAAAGATGACTCCTGTAAACAGCGGGTTTAATTGGCAGTCATACAATGAACAACCTGCCGCCACCGGTGGAGAAAGTTCAATCACAATAAATGCACTTTTGGAGCAGGTCAAAGTGACTCGTGACTCGTCAGATTATTTGTGGTACATGACAGATGTCAACATTAGTCCTAATGAAGCTTTCTTAAAGAATGGCCAATATCCTGTTCTTACTGCAATGTCGGCCGGCCATGTTCTGCATGTTTTTGTTAACGGTCAACTTTCAGGAACTGCGTATGGAGGAATTGATAATCCTAAATTAACATTAAGTAGTAGTGTGAAGCTATGGGCTGGCAATAACAAGATTTCTCTACTCAGTGTTGCAGTCGGTCTCTCGAATGTTGGCTTGCATTACGAAACATGGAACGTCGGAGTCTTAGGCCCGGTAACATTGAAGGGTCTAAATGAGGGGACAAGAGACTTGTCTAAACAAAAATGGTCTTACAAGACTGGACTGAAAGGTGAATCCTTGAACCTTCATACCACAACTGGAAGTTCCTCAGTTAAATGGACACAAGGATCCTTTTTGTCTAAGAAGCAACCTCTCACATGGTACAAGACAACTTTCAGCGCGCCTGCTGGAAACGATCCATTGGCTCTAGATATGAGTAGCATGGGAAAGGGTGAAATATGGGTAAACGGTAAGAGCATTGGTCGCCATTGGCCGGGATACATAGCACGTGGTAATTGTGGCGGTTGTAGTTATGCCGGAACATTTACCGATAAAAAATGCCGAACAAATTGTGGACAACCAACCCAAAAATGGTATCATATTCCTCGCTCGTGGCTGAACTCAGGCGGGAACTTCTTGGTTGTGTTGGAAGAAATGGGTGGTGACCCTACAGGAATTTCTTTGGTGAAAAGAACATAA 2178 0.427 MTMERKFDMVLVLLFLCFCVCSVTASVTYDHKAIVINGQRRILISGSIHYPRSTPQMWPDLIQKAKDGGVDVIETYVFWNGHEPSQGNYYFEDRFDLVKFVKVVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGVAFRTDNEPFKAAMQKFTAKIVSIMKGERLFQSQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLNTGVPWIMCKQEDAPDPIIDTCNGYYCENFSPNKNYKPKMWTENWTGWYTDFGSAVPYRPAEDLAFSVARFVQNRGSYVNYYMYHGGTNFGRTTSGLFIATSYDYDAPIDEYGLTNEPKWGHLKNLHKAIKQCESALVSVDPTVSWPGKNLEVHLYKTSFGACAAFLANYDTSSWAKVPFGNGHYDLPPWSISILPDCKTEVFNTAKVNAPRFHRKMTPVNSGFNWQSYNEQPAATGGESSITINALLEQVKVTRDSSDYLWYMTDVNISPNEAFLKNGQYPVLTAMSAGHVLHVFVNGQLSGTAYGGIDNPKLTLSSSVKLWAGNNKISLLSVAVGLSNVGLHYETWNVGVLGPVTLKGLNEGTRDLSKQKWSYKTGLKGESLNLHTTTGSSSVKWTQGSFLSKKQPLTWYKTTFSAPAGNDPLALDMSSMGKGEIWVNGKSIGRHWPGYIARGNCGGCSYAGTFTDKKCRTNCGQPTQKWYHIPRSWLNSGGNFLVVLEEMGGDPTGISLVKRT 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02285 725 PANTHER BETA-GALACTOSIDASE RELATED 20 724 IPR001944 GO:0004553|GO:0005975
Vivi4g02285 725 FunFam Beta-galactosidase 291 419 - -
Vivi4g02285 725 Gene3D Glycosidases 20 342 - -
Vivi4g02285 725 SUPERFAMILY Galactose-binding domain-like 581 721 IPR008979 -
Vivi4g02285 725 FunFam Beta-galactosidase 22 342 - -
Vivi4g02285 725 Gene3D - 581 725 - -
Vivi4g02285 725 Gene3D - 439 580 - -
Vivi4g02285 725 Pfam Glycosyl hydrolases family 35 34 338 IPR031330 -
Vivi4g02285 725 SUPERFAMILY (Trans)glycosidases 26 343 IPR017853 -
Vivi4g02285 725 FunFam Beta-galactosidase 589 725 - -
Vivi4g02285 725 FunFam Beta-galactosidase 444 581 - -
Vivi4g02285 725 PRINTS Glycosyl hydrolase family 35 signature 170 185 IPR001944 GO:0004553|GO:0005975
Vivi4g02285 725 PRINTS Glycosyl hydrolase family 35 signature 58 76 IPR001944 GO:0004553|GO:0005975
Vivi4g02285 725 PRINTS Glycosyl hydrolase family 35 signature 616 630 IPR001944 GO:0004553|GO:0005975
Vivi4g02285 725 PRINTS Glycosyl hydrolase family 35 signature 37 54 IPR001944 GO:0004553|GO:0005975
Vivi4g02285 725 PRINTS Glycosyl hydrolase family 35 signature 113 132 IPR001944 GO:0004553|GO:0005975
Vivi4g02285 725 PRINTS Glycosyl hydrolase family 35 signature 249 264 IPR001944 GO:0004553|GO:0005975
Vivi4g02285 725 PRINTS Glycosyl hydrolase family 35 signature 286 301 IPR001944 GO:0004553|GO:0005975
Vivi4g02285 725 PRINTS Glycosyl hydrolase family 35 signature 306 322 IPR001944 GO:0004553|GO:0005975
Vivi4g02285 725 PRINTS Glycosyl hydrolase family 35 signature 643 659 IPR001944 GO:0004553|GO:0005975
Vivi4g02285 725 SUPERFAMILY Galactose-binding domain-like 401 571 IPR008979 -
Vivi4g02285 725 Pfam Beta-sandwich domain in beta galactosidase 346 417 IPR041392 -
Vivi4g02285 725 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 172 184 IPR019801 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02285 Vivi-Chr4 113286380 113291856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02285 5 725 Glycoside Hydrolase AT5G56870 70.222 0.0 1075
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02285 - - gmx:100810170 1262.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02285 4 113286380 113291856 Vivi4g02285 4 113286380 113291856 ECH
Vivi1g00694 1 14936830 14941504 Vivi4g02285 4 113286380 113291856 PCT