Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02117 ATGTTGTCGAGAATGGATAGTAAGAAGAATAGTTTGGTTTCTGGAAACCAGAAGAAATTGTTAAAGGATGTTGACACTATGAGTAAAGCTATGCATTTGGATAGAAATGCTTCAAGGAGTTCAGTATCTGGTTCGAATTCAAACTCTCGAGCTAAAACCACGGGAAAACCTGTATTTCCGGATTCAAAACCAAAGGCTAAAGGAAGTAATAGTAATGATGATAATGATGGTTTGCAAAAGGATAAAAGGTCTATATGGAATTGGAGGCCGTTGAAGGCACTTTCGCATATCCGAAATAAACGGTTCAATTGTAGTTTTTATCTTCATGTACATTTGATTGAAGGGTTGCCGTCTACTTTTAATGGTTCGAGTTTTTCTGTGTATTGGAAGAGGAGGGACGGGGTTTTGGTGACTCGTGCGGCAAAAGTGGTTCAGTCTGTGGTTGAATTCGATGAGAAGTTGACTTATACTTGCTCGGTTTATGGTAGTAGGAGTGGACCTCACCATTCTGCGAAGTATGAAGCGAAGCACTTTTTGCTTTACGCTTCTCTTCTCAGTGCACCGGAGCTTGATTTGGGGAAGCACCGAGTTGATCTCACGAGGTTGCTTCCTCTTACTCTGGAGGAGCTTGAGGAGGAGAAGAGCTCGGGTGAGTGGACTACTAGTTTCAGGTTATCAGGAAAGGCTAAGGGTGCTGTGATGAATGTCAGTTTTGGGTATACGGTTGTTGGTGATAACGCCAGCGCGACCAAAGATGGCCATAATGCTCCTAATGTATTGACTTCGAGGCAGAGTAGTCTTGCATTGATGAAACCAGATGTTAAACAGAGACAGTATGATGGAAGCAGTAGTATGAGGCGTGCCGGAAGTTTTCAAGGTGCTTTACCCGTAGACGCTCCTCCAGCTAAAAATCTTAGCAGACTGTACTCGTCTCAAGCTGTAGAATCGGTAAAGGATCTTCACGAGGTGTTGCCATCTTCTAAGTCTGCACTAGCCAGCTCAATAGGCGTCTTATATAAGAAATTTGATGAGGAAAAAGAAAGCAGATCTGAGGACAACAAACCTGATCCTGATTTGTCAAAAGAAAATATTGAGGTAATCAAACCAGATGCATGTGCTTCATCTGATATTGGAAAAGAAACGCCGGAAGTGCATGCGGTTAACGATGAAAATACATGCCCAGTGCTTGACACCCCTGAACTCGATGTATCTCATGAAAACCTAGAGACAAATACACAAGATGACTATCTTTTACTTGATTCCGAAAAAGAAAACCCTGAAGACTGTCAAGATAAGGATTTTTTGGTCGTTGATAAGGGTATAGAAATCTCGACAATTGAACCTGTTAAAGTAGAGGAATCGTTCACAAAGGCTTCTGAAGATGCTTCTACAGTTGCTGAAGATGCTTCTACAGTTGATAGTACTTTTATCGCTGATACTGCAGGCTTACAAGTATCTTCTGAAGATACTTTTATACATGGTTCTCTTCATGATGCAAATGATGGTTCTAAGGATCAAACAGTGGTAGATGAATCTGCTTGCGAAGATGATGATTTATTAACAAATGAACTGCTGCAAGAACTAGAAGCTGCTATAAATAGTGTTTCAGATTTGGAGACGGTGGCCCTAGAATCTCCAAAAGTTTTGGAATTCAAATCTGAATATAAGATGAGAAAGACAGATAGCTTAGACGATGTTACGGAATCGGTTGCGAATGAATTTTTAAGTATGCTAGACATAGACCACAGTTCAGCGGGCTCAAATTCTGAAAATGAGCCCGAGTCTCCGAGAGAGCTTCTGTTGAGACAGTTTGAGAAGGAATCACTGGGTGCTGGCTTCTCTTTATTTGATTTTGATATGGACTGTGACAACGAAGCTGGTGATGACTATGATGCCTCTACTGGATCTGAGCAGTTGAACTTTTCTGAGGCTATTCATTCATCATCCTTGTTCCAAAACCTGAACAAGGACCATCTTGTTGAGACTCGAGACGTTAAAGGAAAACAAAAGGCTCAAATGCTAGAAGACTTGGAAACAGAAGCCTTAATGCGTGAATGGGGTTTGAACGAGAAGGCTTTTCATCATTCTCCGCCAAAAGACTATGCTGGTTTTGGAAGTCCAATTCAATTACCACCTGAAGAGCTTCCCACATTGCCTCCTCTTGCCGAGGGGTTAGGCCCTTTTCTTCAGACAAAAGATGGGGGTTATCTGCGGTCTATGAATCCGTCAATTTTCAAGAACACTAAAGCTGGTGGGAGTTTAGTCATGCAGGTTTCCAACCCTGTTGTTGTACCTGCAGAAATGGGTTCCGGAATAATGGAAGTTTTACAGTGTTTGGCTTCAGTGGGAATTGAAAAACTCTCAATGCAGGCAAAGGAGTTAATGCCACTGGAAGATGTCACCGGGAAGACAATGCAACAAGTAGCATGGGAAGCTATGCCGGCCTTAGAGGGAACAGAGAGGCAATGTCATTTGCAACCAGATTCAGTAACAGGTCAAGATGCTATGTGTGTGCAAAGGGACTTGAAAGGAACACCACCATCTGGACCGAAGTCTGGCAACTTTAATTCAAGATCAGTGGCCAACCAAACAGGCTCAGAGTTTGTTTCAATTGATGATCTTGCCCCACTGGCTATGAACAAAATTGAAGCGCTTTCGATGGAGGGATTGAGAATACAATCAGGGATGTCAGAGGAGGAGGCCCCATCTAACATCGTTGCACAATCCATTGGTGAAATGTCAGCTCTTCAAGGCAAGGGCATTGATATTAGCGGATCCCTCGGCATGGAAGGAGCTGCTGGTTTACAGTTGATGGATGTAAAAGACAGCAGTGACAGTGACAGTGTTGACGGGATAATGAGCCTTTCGTTAACTCTTGATGAGTGGATGAAACTCGATTCTGGTGACATTGATGATATAGATAATATCAGTGAGCACACTTCCAAACTTCTCGCAGCTCATCATGCCAACTCTTTTGACTTTATCCGCGGGAGTTCAAAAAGCGGAGATAGGAGACGAGGCAAAGGTTCAGGTAGAAGATGCGGTTTGCTAGGAAACAATTTCACAGTAGCATTAATGGTGCAGCTTCGCGACCCTCTAAGAAATTATGAGCCAGTTGGAACACCAATGCTTGCTCTTATACAGGTTGAAAGAGAGTTTGTCTTACCAAAGCAAAAAATATTTTGTAGTGTGTCCGAGTTACGGAACTACAATAATGACGAGGATGATGAGGGCAATATCATAGCGAAGGTGGAGGAGATCAAGGATACAGAAAAAGAAGAGAAAATTTCCGAAGCAGAACTCATTCCTCAGTTCAAGATTACTGAAGTTCACGTGGCGGGTCTTAAAACCGAGCCACAGAAAAAGAAGCTTTGGGGAACCTCGACGCAGCAACAATCCGGCTCACGCTGGTTGGTTGCGAATGGAATGGGAAAGAACAGCAAGTTTCCAGCAATGAAGTCAAAGGCTGCAGCTAAATCTATCGCTCCGGTTACGACAAAGGTGCAGCAGCCTGGTGAAACGTTGTGGAGCATTTCTTCACGACTTTTAGGTTCTGGAAAAAAATGGAAGGAATCGGCAGCTCAAAATCCGCATATAAGAAACCCGAATGTCATTATACCAAATGACACTGTTAGACATAGTTGA 3645 0.4288 MLSRMDSKKNSLVSGNQKKLLKDVDTMSKAMHLDRNASRSSVSGSNSNSRAKTTGKPVFPDSKPKAKGSNSNDDNDGLQKDKRSIWNWRPLKALSHIRNKRFNCSFYLHVHLIEGLPSTFNGSSFSVYWKRRDGVLVTRAAKVVQSVVEFDEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAPELDLGKHRVDLTRLLPLTLEELEEEKSSGEWTTSFRLSGKAKGAVMNVSFGYTVVGDNASATKDGHNAPNVLTSRQSSLALMKPDVKQRQYDGSSSMRRAGSFQGALPVDAPPAKNLSRLYSSQAVESVKDLHEVLPSSKSALASSIGVLYKKFDEEKESRSEDNKPDPDLSKENIEVIKPDACASSDIGKETPEVHAVNDENTCPVLDTPELDVSHENLETNTQDDYLLLDSEKENPEDCQDKDFLVVDKGIEISTIEPVKVEESFTKASEDASTVAEDASTVDSTFIADTAGLQVSSEDTFIHGSLHDANDGSKDQTVVDESACEDDDLLTNELLQELEAAINSVSDLETVALESPKVLEFKSEYKMRKTDSLDDVTESVANEFLSMLDIDHSSAGSNSENEPESPRELLLRQFEKESLGAGFSLFDFDMDCDNEAGDDYDASTGSEQLNFSEAIHSSSLFQNLNKDHLVETRDVKGKQKAQMLEDLETEALMREWGLNEKAFHHSPPKDYAGFGSPIQLPPEELPTLPPLAEGLGPFLQTKDGGYLRSMNPSIFKNTKAGGSLVMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDVTGKTMQQVAWEAMPALEGTERQCHLQPDSVTGQDAMCVQRDLKGTPPSGPKSGNFNSRSVANQTGSEFVSIDDLAPLAMNKIEALSMEGLRIQSGMSEEEAPSNIVAQSIGEMSALQGKGIDISGSLGMEGAAGLQLMDVKDSSDSDSVDGIMSLSLTLDEWMKLDSGDIDDIDNISEHTSKLLAAHHANSFDFIRGSSKSGDRRRGKGSGRRCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFVLPKQKIFCSVSELRNYNNDEDDEGNIIAKVEEIKDTEKEEKISEAELIPQFKITEVHVAGLKTEPQKKKLWGTSTQQQSGSRWLVANGMGKNSKFPAMKSKAAAKSIAPVTTKVQQPGETLWSISSRLLGSGKKWKESAAQNPHIRNPNVIIPNDTVRHS 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02117 1214 Gene3D LysM domain 1157 1213 IPR036779 -
Vivi4g02117 1214 MobiDBLite consensus disorder prediction 1 79 - -
Vivi4g02117 1214 MobiDBLite consensus disorder prediction 1 17 - -
Vivi4g02117 1214 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 99 244 IPR019448 -
Vivi4g02117 1214 MobiDBLite consensus disorder prediction 275 297 - -
Vivi4g02117 1214 ProSiteProfiles C2 NT-type domain profile. 94 242 IPR019448 -
Vivi4g02117 1214 MobiDBLite consensus disorder prediction 344 365 - -
Vivi4g02117 1214 ProSiteProfiles LysM domain profile. 1165 1213 IPR018392 -
Vivi4g02117 1214 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1208 IPR039614 -
Vivi4g02117 1214 CDD LysM 1170 1212 IPR018392 -
Vivi4g02117 1214 MobiDBLite consensus disorder prediction 1193 1214 - -
Vivi4g02117 1214 MobiDBLite consensus disorder prediction 33 55 - -
Vivi4g02117 1214 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02117 Vivi-Chr4 104744230 104749025 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02117 - - mtr:25486459 1840.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02117 4 104744230 104749025 Vivi4g02117 4 104744230 104749025 ECH
Vivi1g00761 1 16318030 16321801 Vivi4g02117 4 104744230 104749025 PCT