Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02060 ATGGCTCCACCAGCCAAAACAACACCCAAACCTTCCCAACCAAACCACATTCACCCTCTCACTCCCTCTCAATCCACCGAATCTCCTCCCATCTCCTCCTCCGTCCCGCCGCGAAGACGCAGCCTCCGCCTCGCCGGTATTTCCATCTCCGAACCTCCTCAATCCCCAGCCGATTCAACCCCCAAACCTTCCGCTAGGGTTTCCAAATCAAAAACTCCAACCGCTTCGGAATCCCAACCTAATCAAACCGGCACGAGTTCCGTTAACTTGCGATCAGGAACAAAATCTCTCAAACGCGGAATCGCTATCGCAAACGAAGATAAAGACGATTCTGAAAATAACGCTACAAAAAAGAACAAAATATACGATGAAGGTGAATCGAGTAACAGAGGAATACTTACAGAAGAAGAGAAAGGGAAGGAAACTGTTGTTATTGATGAAAATGATGAAAGCAGCGATGAAGATGATGACAGCAGCGATGAAGAATCTGAAATAGAGAACACTACTGAAGAGAAAAATGATGAATCGAATGTTATAGAACAATCTAGAAACCCTATGAATAACTCCAGAGAGGCACGAGGTTATAGAAGGAACTTAAGGAACTTGGAACGATTCCGTAACATAGCGAGAGAGAACGCGTCTCGTTTTGCTCTTTTCGCTGATGATGAAGACAATGTCAATGATTTATCTCCGGAGAATGAGCAGGAGAGGAATGAGATTGAGATTGAAGATTGGCCTGGTCCTTTTTCGACTGCTATGAAAATCATTAGGGATAGAGAGAAGAAAGGGATTCAGTTTCAAGCGGGGTCTGCTCCTATACAGAAGGATTTGATTGATTCGATAAAGTGGACTTCGAAAAGGATTGGGGGGAAGTTAGATGGAAAGGTTTCTGTTCCTTCGTTGCAGGAACTTTGCATTCGGATTCTTGCTAAGAATGTTGATGCCGTTGTTTCGCTTGAGAGCGTGCCTGATGATTTGAGGCATAGGCTTAGTCAGTTGCTGTGTGATTCGCGAAGGATTAACGATCACTTTTTTGGACTTCTTGTTGGTGGAGCTCCCACGGAGATTCGGCTCAGAAATTGCTCGTGGCTGTCTGAGGATCATTTTACCAAGTGCTTTCAAGCAAGTGATACTTCTAATTTGGTGGTACTGCAACTTGATCTGTGTGGGCGGTGTTTGCCGGATTATGTGGTAGTTGCCACTTTAGCACGGTCCCCAAAGCAGCTGCCTAATTTAACTAGTCTATCTCTCAGAGGTGCTTGCCGACTCTCAGATGGGGGATTGCGCACACTTGTTTCTTCTACTCCAACACTTAGATCAATAAATCTTAGCATGTGCTCCCTTCTCACTTCTGCTAGTCTTTATATTTTGGCTGAAACATTAAAATCTCTTTTGAAAGAGTTGTACCTTGATCATTGCATTGGCATTGATGCTGCACTAATTGTGCCAGCACTGGTGGAGTTTGAACATTTAGAAGTGTTGTCACTGGCTGGCATTCCAACTGTTTGCGATACATTCGTCAAGGATTACATTGTTGCACGTGGTCACAACATGAAAGAGCTAATTCTGAAGGACTGCATAAACTTGACCGATGCATCAATAAAAGTCATTGCTGAATACTGTCCTGGAATATGTGAGCTGGATTTATCGAATGTGTGCAAATTGACAGATCTGTCCATGGGGTATCTTACAAATGGTTGTCGTGCACTTCATACATTGAAGCTTTGCCGTAACTCATTCAGTGATGAAGCAGTTGCTGCATTTGTGGAGACTAATGGAGAGTCTTTGAAAGAACTATCTCTTAATAACGTCAAAAAGGTTGGCTACCACACAACCTTATCACTTGCAAGCCATGCAAAAAAACTGCATAGTCTAGATTTATCTTGGTGCCGAAATTTGACTGACAACGCTTTAGGTTTGATAGCGGACAGTTGCACGGCGCTGAGATTACTCAAACTTTTTGGATGTACTCAGGTAACAGATGTTTTTCTGAAGGGGCACTCAAACTCTCAGATGCAGATAATTGGTATAAAAATGACTTCTGTTTTGCAGCATGTCAAAGTGCCGGATCCTCATAGAGCCGCACTGAATTATTCATCAGTCTCTGTAGATTTGGCCGCGTAG 2124 0.4355 MAPPAKTTPKPSQPNHIHPLTPSQSTESPPISSSVPPRRRSLRLAGISISEPPQSPADSTPKPSARVSKSKTPTASESQPNQTGTSSVNLRSGTKSLKRGIAIANEDKDDSENNATKKNKIYDEGESSNRGILTEEEKGKETVVIDENDESSDEDDDSSDEESEIENTTEEKNDESNVIEQSRNPMNNSREARGYRRNLRNLERFRNIARENASRFALFADDEDNVNDLSPENEQERNEIEIEDWPGPFSTAMKIIRDREKKGIQFQAGSAPIQKDLIDSIKWTSKRIGGKLDGKVSVPSLQELCIRILAKNVDAVVSLESVPDDLRHRLSQLLCDSRRINDHFFGLLVGGAPTEIRLRNCSWLSEDHFTKCFQASDTSNLVVLQLDLCGRCLPDYVVVATLARSPKQLPNLTSLSLRGACRLSDGGLRTLVSSTPTLRSINLSMCSLLTSASLYILAETLKSLLKELYLDHCIGIDAALIVPALVEFEHLEVLSLAGIPTVCDTFVKDYIVARGHNMKELILKDCINLTDASIKVIAEYCPGICELDLSNVCKLTDLSMGYLTNGCRALHTLKLCRNSFSDEAVAAFVETNGESLKELSLNNVKKVGYHTTLSLASHAKKLHSLDLSWCRNLTDNALGLIADSCTALRLLKLFGCTQVTDVFLKGHSNSQMQIIGIKMTSVLQHVKVPDPHRAALNYSSVSVDLAA 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02060 707 SMART LRR_CC_2 515 540 IPR006553 -
Vivi4g02060 707 SMART LRR_CC_2 541 566 IPR006553 -
Vivi4g02060 707 SMART LRR_CC_2 619 644 IPR006553 -
Vivi4g02060 707 SMART LRR_CC_2 409 434 IPR006553 -
Vivi4g02060 707 SMART LRR_CC_2 435 460 IPR006553 -
Vivi4g02060 707 SMART LRR_CC_2 593 618 IPR006553 -
Vivi4g02060 707 SMART LRR_CC_2 567 591 IPR006553 -
Vivi4g02060 707 SMART LRR_CC_2 645 670 IPR006553 -
Vivi4g02060 707 MobiDBLite consensus disorder prediction 147 169 - -
Vivi4g02060 707 SUPERFAMILY RNI-like 353 662 - -
Vivi4g02060 707 MobiDBLite consensus disorder prediction 52 94 - -
Vivi4g02060 707 MobiDBLite consensus disorder prediction 101 146 - -
Vivi4g02060 707 MobiDBLite consensus disorder prediction 11 35 - -
Vivi4g02060 707 Gene3D Ribonuclease Inhibitor 614 691 IPR032675 -
Vivi4g02060 707 Gene3D Ribonuclease Inhibitor 506 613 IPR032675 -
Vivi4g02060 707 Gene3D Ribonuclease Inhibitor 305 505 IPR032675 -
Vivi4g02060 707 MobiDBLite consensus disorder prediction 1 195 - -
Vivi4g02060 707 PANTHER UNCHARACTERIZED 299 479 - -
Vivi4g02060 707 FunFam RNI-like superfamily protein 291 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02060 Vivi-Chr4 99550829 99556101 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02060 K15082 - gmx:100808150 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02060 4 99550829 99556101 Vivi4g02060 4 99550829 99556101 ECH
Vivi1g00785 1 16948890 16951216 Vivi4g02060 4 99550829 99556101 PCT