Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01989 ATGGTGGCGTTTAGCTCTCACAAGAGTACAAGTTTCTTCTTTGTGTTTCTAATTGTTGCAGCTCTTGGTTCGGTTTTTCTGGTGTGGCAGAAGAATGCGATTAATGGGTTTTTGGTTTTGGGTGGGGAAATGGTTTGGGAGGCACCAAAGCTGAGGCCTGTGGTGTTCAATTTGACTGAGTTTGGTGGGGTTGGTGATGGGGTTACTGTTAATACTCAGGCTTTTGAAAGAGCTGTTTCTGTTGTGTCTAAGTTTGGGGATAAGGGTGGTGCTCAGTTGAATGTGCCACCTGGTCTTTGGCTTACTGCGCCGTTTAATCTTACAAGTCATATGACTCTTTTTCTAGCTCATGATGCTGTCATTCTTGGAATTCAGGATGAAAAGTATTGGCCGTTGATGCCAGCATTGCCTTCATATGGATATGGTAGGGAGCATCCTGGGCCGCGGTATAGCAGTTTGATTCATGGTCAACATCTTAAAGATGTCGTGATAACAGGGCATAATGGTACCATAGACGGACAGGGACAGACATGGTGGACAAAACATCTGAATAAACTTCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGCAACATTGTGATCTCAAATATTACTCTGCGCAACTCTCCTTTTTGGACTCTTCATCCATATGACTGCAAGAATGTAACAATAAAAAATGTTACAATATTGGCTCCCGTATATCATGCTCCGAATACTGATGGCATAGATCCAGATTCTTGCGAGGATATGTTGATAGAGGATTGTTACATAAGTGTGGGAGATGATGCAATTGCGATAAAAAGTGGCTGGGATCAATATGGAATTGCTTATGGAAAGCCTTCTAAGAACATATTAATCCGAAACCTTGTCGTTCGTTCTAATGTCAGTGCTGGCATCTCCATAGGAAGTGAGATGTCTGGCGGAGTATCCAACGTCACCATCGAAAACATTCTTGTTTGGGAATCTAGACGTGCCATCAGGATCAAAACTGCACCTGGAAGAGGCGGATACGTTCGCCAAATAACTTACCGAAATCTCACTTTCCATAACGTCCGTGTTGGAATTGTTATCAAGACCGATTACAACGAACACCCTGACGCCGGATATGATCCTACCGCACTTCCAATTCTCAGAGACATAAGCTTCACCGGTCTCCGTGGCGAGGGAGTTCGTGTTCCTGTACGAATTCAAGGTAGCAAAGAGATTCCAGTTAGAAATGTGACTTTCCAAGACATGAATGTTGGGATAACATACAAAAAGAAACATATCTTTCAGTGCGCGTTTGTGGAAGGTCAGGTAATAGGGACCATTTTTCCGAAACCATGTCGGAATTTCGATCAGGTCAACGAGCAAGGAGAGTTGGTTAAGCCCGCCGCGTCGCAGAATGTAACAGATATAGATTATGAAATCTGA 1425 0.4372 MVAFSSHKSTSFFFVFLIVAALGSVFLVWQKNAINGFLVLGGEMVWEAPKLRPVVFNLTEFGGVGDGVTVNTQAFERAVSVVSKFGDKGGAQLNVPPGLWLTAPFNLTSHMTLFLAHDAVILGIQDEKYWPLMPALPSYGYGREHPGPRYSSLIHGQHLKDVVITGHNGTIDGQGQTWWTKHLNKLLNHTRGPLVQIMWSSNIVISNITLRNSPFWTLHPYDCKNVTIKNVTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSKNILIRNLVVRSNVSAGISIGSEMSGGVSNVTIENILVWESRRAIRIKTAPGRGGYVRQITYRNLTFHNVRVGIVIKTDYNEHPDAGYDPTALPILRDISFTGLRGEGVRVPVRIQGSKEIPVRNVTFQDMNVGITYKKKHIFQCAFVEGQVIGTIFPKPCRNFDQVNEQGELVKPAASQNVTDIDYEI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01989 474 SUPERFAMILY Pectin lyase-like 44 447 IPR011050 -
Vivi4g01989 474 SMART pbh1 403 424 IPR006626 -
Vivi4g01989 474 SMART pbh1 251 272 IPR006626 -
Vivi4g01989 474 SMART pbh1 223 250 IPR006626 -
Vivi4g01989 474 SMART pbh1 342 363 IPR006626 -
Vivi4g01989 474 SMART pbh1 313 334 IPR006626 -
Vivi4g01989 474 SMART pbh1 285 307 IPR006626 -
Vivi4g01989 474 SMART pbh1 376 398 IPR006626 -
Vivi4g01989 474 Gene3D - 43 437 IPR012334 -
Vivi4g01989 474 PANTHER PECTIN LYASE-RELATED 31 457 - -
Vivi4g01989 474 Pfam Glycosyl hydrolases family 28 151 433 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01989 Vivi-Chr4 95319833 95323605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01989 4 474 Glycoside Hydrolase AT3G42950 71.222 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01989 - - gmx:100791187 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01989 4 95319833 95323605 Vivi4g01989 4 95319833 95323605 ECH
Vivi1g00813 1 17472679 17476879 Vivi4g01989 4 95319833 95323605 PCT