Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00813 ATGATGGTGGAAACCTCAATGCTAGGGCGGTTCCACCACCAAAGACTCGACTTCAAACGCTGCGTTCCGGCATTCATAACCTCACACAAGACGCTCTTCATGATTCTATGGATCGCCGCGTTTCTATCGGTTTTCGTGTGGCAGAGAAGCACGGTGGTTGGTGGAGTTTTGTTTTTCGGCCGGGTTGCGGTGAGGCCGATTCCGATTATGAGACCGGTGGCGTTCAATTTGACGGATTTTGGAGGCGTGGGTGATGGGGTTACGCTGAATACTGAGGCGTTTGAGAGAGGTGTTTCGGCTATTTCGAAATTGGGGAAGAAAGGTGGAGGGCAGCTTAATGTTCCTCCTGGTCGTTGGCTCACTGCACCATTTAATCTTACCAGTCATATCACTTTGTTTCTAGCTGAAGATGCTGTTATTCTTGCCATTGATGATGAAAAGTATTGGCCACTAATGCCTCCCTTGCCTTCATACGGGTATGGAAGGGAGCGTCCTGGGCCTCGATATGGCAGTTTGATTCACGGTCAGAATCTTAAAGATGTTGTGATAACAGGGCACAATGGCACCATAAATGGACAAGGACAAGCATGGTGGAAAAAATTTCGCCAAAAACGTCTCAACTACACAAGGGGACCACTTGTTCAGATCATGTGGTCTAGTGACATTGTAATCACTAATATTACTTTACAAGACTCTCCGTTCTGGACGCTTCATCCATATGATTGCAAAAACATTACAATAAAAGGTGTTACAATTTTGGCTCCTGTAATTGATGCTCCAAATACCGACGGCATAGATCCTGATTCTTGCGAGGATATGTTGATAGAAGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGTTGGGATCAGTATGGAATTGCTTATGGAAGACCTTCCATGAATATTATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGTATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACATCACGGTAGAGAATCTTCGCGTGTGGGATTCAAGGCGTGGTGTGAGGATAAAGACTGCACCTGGGCGAGGTGGATACGTGCGACAAATAACTTATCGTAATATCACTTTTGAGAATGTCCGTGTTGGAATTGTGATGAAGACAGATTACAATGAACACCCCGACGATGGATATGACCCTACAGCACTTCCAGATATACGAGACATTAGCTTCACAAGCATCTACGGTCATGGAGTTCGTGTGCCGGTACGTATTCATGGCAGCGAAGAGATTCCCGTGAGAAACGTAACTTTTCGAGAAATGTCAGTTGGGTTAACCTACAAGAAAAAACACATCTTTCAGTGTGCATTTGTACACGGACGCGTAATAGGGACCATTTTCCCCTCTCCATGCGAGAACCTTGATCGGTACAATGAGCAAGGACAGCTTGTTAAACATTCCATGTCACAGAATGTAACAGATATAGATTATGATTTTTGA 1482 0.4487 MMVETSMLGRFHHQRLDFKRCVPAFITSHKTLFMILWIAAFLSVFVWQRSTVVGGVLFFGRVAVRPIPIMRPVAFNLTDFGGVGDGVTLNTEAFERGVSAISKLGKKGGGQLNVPPGRWLTAPFNLTSHITLFLAEDAVILAIDDEKYWPLMPPLPSYGYGRERPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWKKFRQKRLNYTRGPLVQIMWSSDIVITNITLQDSPFWTLHPYDCKNITIKGVTILAPVIDAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGVSNITVENLRVWDSRRGVRIKTAPGRGGYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPTALPDIRDISFTSIYGHGVRVPVRIHGSEEIPVRNVTFREMSVGLTYKKKHIFQCAFVHGRVIGTIFPSPCENLDRYNEQGQLVKHSMSQNVTDIDYDF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00813 493 Gene3D - 64 454 IPR012334 -
Vivi1g00813 493 SMART pbh1 361 382 IPR006626 -
Vivi1g00813 493 SMART pbh1 395 417 IPR006626 -
Vivi1g00813 493 SMART pbh1 332 353 IPR006626 -
Vivi1g00813 493 SMART pbh1 304 326 IPR006626 -
Vivi1g00813 493 SMART pbh1 270 291 IPR006626 -
Vivi1g00813 493 SMART pbh1 242 269 IPR006626 -
Vivi1g00813 493 PANTHER PECTIN LYASE-RELATED 48 481 - -
Vivi1g00813 493 Pfam Glycosyl hydrolases family 28 171 453 IPR000743 GO:0004650|GO:0005975
Vivi1g00813 493 SUPERFAMILY Pectin lyase-like 65 466 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00813 Vivi-Chr1 17472679 17476879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00813 2 492 Glycoside Hydrolase AT1G19170 73.663 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00813 - - gmx:100818529 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00813 1 17472679 17476879 Vivi1g00813 1 17472679 17476879 ECH
Vivi1g00813 1 17472679 17476879 Vivi4g01989 4 95319833 95323605 PCT