Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi4g01591 | ATGAGCTGGTCAGGAGGAGATTGGATGTGTAATGCTTGCCAGCACATAAACTTCAAGAAGAGGGATGCATGCCAAAATTGTGGATACCCTAAGATTGGAGGTCCTGATCCAGAAACTTATAGATATAACTGGACTGGAAACTTAGCAGGGGACTGGTATTGCAGTGGTATGAACTGTGGAGCTCACAACTACGCTAGCAGAACAAGCTGTTATAGATGTGGTGCACTGAAAAATGGTTACTCATGTGGATTTGGTGGCAACATGGAAGCCTCTGATTGCAATTATCCCCCTGGATGGAAAACTGGTGATTGGATTTGCACTAGATATGGCTGTGGAGTGCATAATTATGCTAGCAGAACTGAATGCTTCAAGTGCAAAACACCCAAAAGTTTTGGTAATTCTGATTGA | 408 | 0.4314 | MSWSGGDWMCNACQHINFKKRDACQNCGYPKIGGPDPETYRYNWTGNLAGDWYCSGMNCGAHNYASRTSCYRCGALKNGYSCGFGGNMEASDCNYPPGWKTGDWICTRYGCGVHNYASRTECFKCKTPKSFGNSD | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi4g01591 | 135 | ProSitePatterns | Zinc finger RanBP2-type signature. | 8 | 27 | IPR001876 | - | |
| Vivi4g01591 | 135 | SUPERFAMILY | Ran binding protein zinc finger-like | 3 | 33 | IPR036443 | - | |
| Vivi4g01591 | 135 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 100 | 131 | IPR001876 | - | |
| Vivi4g01591 | 135 | ProSitePatterns | Zinc finger RanBP2-type signature. | 52 | 73 | IPR001876 | - | |
| Vivi4g01591 | 135 | Gene3D | - | 48 | 79 | - | - | |
| Vivi4g01591 | 135 | Gene3D | - | 90 | 131 | - | - | |
| Vivi4g01591 | 135 | Gene3D | - | 1 | 35 | - | - | |
| Vivi4g01591 | 135 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 48 | 79 | IPR001876 | - | |
| Vivi4g01591 | 135 | PANTHER | ZINC FINGER PROTEIN | 50 | 132 | - | - | |
| Vivi4g01591 | 135 | SMART | zf_4 | 6 | 30 | IPR001876 | - | |
| Vivi4g01591 | 135 | SMART | zf_4 | 50 | 76 | IPR001876 | - | |
| Vivi4g01591 | 135 | SMART | zf_4 | 102 | 128 | IPR001876 | - | |
| Vivi4g01591 | 135 | Pfam | Zn-finger in Ran binding protein and others | 100 | 129 | IPR001876 | - | |
| Vivi4g01591 | 135 | Pfam | Zn-finger in Ran binding protein and others | 49 | 77 | IPR001876 | - | |
| Vivi4g01591 | 135 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 4 | 33 | IPR001876 | - | |
| Vivi4g01591 | 135 | SUPERFAMILY | Ran binding protein zinc finger-like | 49 | 79 | IPR036443 | - | |
| Vivi4g01591 | 135 | SUPERFAMILY | Ran binding protein zinc finger-like | 96 | 132 | IPR036443 | - | |
| Vivi4g01591 | 135 | ProSitePatterns | Zinc finger RanBP2-type signature. | 104 | 125 | IPR001876 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi4g01591 | Vivi-Chr4 | 63951248 | 63952584 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi4g01591 | - | - | gmx:100792208 | 270.011 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vivi1g01646 | 1 | 34683282 | 34685206 | Vivi4g01591 | 4 | 63951248 | 63952584 | PCT | |
| Vivi4g01591 | 4 | 63951248 | 63952584 | Vivi1g01644 | 1 | 34668792 | 34670969 | PCT |