LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g01644	ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCGAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAAAGTTGTGGGTACCCCAAGTATGGAGGCCCTGACCCATCAACCTATAGATATAACAGGACTGAAACGTTGGCAGGGGACTGGTTTTGCACCGCTATCAACTGTGGAGCTCACAACTATGCAAGCAGATCCAACTGCTATAGATGTGGTTCATTTAAAGTTGAATATTCTTCTGGATATGGGGGTAACATGGCCGGTTCTGGAGGATATGGATCTGATTGCACTTCTCCACCGGGATGGAAAAGTGGAGACTGGATTTGCCCAAGAACTGGCTGTGGAATTCATAATTATGCTAGCAGGACTGAATGCTACAAATGCAAAATGCCAAGGGATTATGGTGGTGCTGACCGAAAGTAA	429	0.4639	MSWSGGDWMCGACEHINFKKREACQSCGYPKYGGPDPSTYRYNRTETLAGDWFCTAINCGAHNYASRSNCYRCGSFKVEYSSGYGGNMAGSGGYGSDCTSPPGWKSGDWICPRTGCGIHNYASRTECYKCKMPRDYGGADRK	142

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g01644	142	ProSitePatterns	Zinc finger RanBP2-type signature.	8	27	IPR001876	-
	Vivi1g01644	142	Gene3D	-	99	136	-	-
	Vivi1g01644	142	Gene3D	-	1	35	-	-
	Vivi1g01644	142	Gene3D	-	42	79	-	-
	Vivi1g01644	142	Pfam	Zn-finger in Ran binding protein and others	49	75	IPR001876	-
	Vivi1g01644	142	Pfam	Zn-finger in Ran binding protein and others	6	32	IPR001876	-
	Vivi1g01644	142	Pfam	Zn-finger in Ran binding protein and others	105	133	IPR001876	-
	Vivi1g01644	142	PANTHER	ZINC FINGER PROTEIN	44	136	-	-
	Vivi1g01644	142	SUPERFAMILY	Ran binding protein zinc finger-like	100	136	IPR036443	-
	Vivi1g01644	142	ProSitePatterns	Zinc finger RanBP2-type signature.	52	73	IPR001876	-
	Vivi1g01644	142	ProSitePatterns	Zinc finger RanBP2-type signature.	109	130	IPR001876	-
	Vivi1g01644	142	ProSiteProfiles	Zinc finger RanBP2 type profile.	105	136	IPR001876	-
	Vivi1g01644	142	ProSiteProfiles	Zinc finger RanBP2 type profile.	4	33	IPR001876	-
	Vivi1g01644	142	SMART	zf_4	50	76	IPR001876	-
	Vivi1g01644	142	SMART	zf_4	6	30	IPR001876	-
	Vivi1g01644	142	SMART	zf_4	107	133	IPR001876	-
	Vivi1g01644	142	SUPERFAMILY	Ran binding protein zinc finger-like	3	34	IPR036443	-
	Vivi1g01644	142	SUPERFAMILY	Ran binding protein zinc finger-like	45	79	IPR036443	-
	Vivi1g01644	142	ProSiteProfiles	Zinc finger RanBP2 type profile.	48	79	IPR001876	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g01644	Vivi-Chr1	34668792	34670969	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g01644	-		-	gmx:100792208	259.225

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi4g01591	4	63951248	63952584	Vivi1g01644	1	34668792	34670969	PCT