Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01488 ATGAAATTCGGAAAGAGTCTCAACAACCAGATCGAGAAAACCGTTCCTCAATGGCGTGACAAGTTTCTCTCTTACAAGCTACTCAAGAAGAAATTGAAGCTCGTTCCAATAATAGCCGATGAACGCCCTACCAAAAGAGCTAGGATCGACGATAGGGAAATGTCAAATGAAGAAACTGATTTCAGAAATTCCCTTGAAAATGAACTCCACAAATTCAATAGTTTCTTTGTTGAGAAAGAGGAAGAGTGCATTATAAGATTCAAGGAGTTACAAGATTGTGTGGCGAAAGGAAAGGGTTCGAATGAACAAATGATGCAGATTCACAAGGATATTGTAGATTTTCATGGAGAAATGGTTTTACTTGAAAATTACAGTGCCCTTAATTACACAGGACTAGTGAAAATACTAAAGAAGTATGACAAGAGAACGGGAGCTCTGATTCGGTTGCCATTCATTCAGAAGGTATTGCAAGAACCATTCTTTACCACTGATCTGCTCTACAAGCTTATAAAAGAGTGTGAAACAATGTTGGATGGCCTTTTCCCCTTCAGCGAATCAGCGGAACGGGGTGATGTTTGTTCTAATTCGACGAGTTTGACGAACTTGGATCATTTTATGCCAGAGGAGATAGCTGAAATGCAGAGCCTCTATTTGAAGAGTACAATATCTGCTTTGAATGTTCTGCAGGAAATTAGAAGTGGTAGCTCCACTGTTAGCATGTTTTCTTTGCCACCGTTGGAACAAACTTTGAACAACATTTCTGTTTTGGAACAAACAGCCAAGTAA 786 0.3931 MKFGKSLNNQIEKTVPQWRDKFLSYKLLKKKLKLVPIIADERPTKRARIDDREMSNEETDFRNSLENELHKFNSFFVEKEEECIIRFKELQDCVAKGKGSNEQMMQIHKDIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQEPFFTTDLLYKLIKECETMLDGLFPFSESAERGDVCSNSTSLTNLDHFMPEEIAEMQSLYLKSTISALNVLQEIRSGSSTVSMFSLPPLEQTLNNISVLEQTAK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01488 261 CDD SPX_AtSPX1_like 2 142 - -
Vivi4g01488 261 ProSiteProfiles SPX domain profile. 1 153 IPR004331 -
Vivi4g01488 261 Coils Coil 246 261 - -
Vivi4g01488 261 Pfam SPX domain 1 35 IPR004331 -
Vivi4g01488 261 Pfam SPX domain 106 155 IPR004331 -
Vivi4g01488 261 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 248 IPR031142 GO:0016036
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01488 Vivi-Chr4 57173931 57175125 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01488 - - psat:127092838 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01488 4 57173931 57175125 Vivi4g01488 4 57173931 57175125 ECH
Vivi1g01599 1 33836301 33838648 Vivi4g01488 4 57173931 57175125 PCT