Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00595 ATGGAAGTTCAATTTGTTGTTTTTGTAATGTTTGTTATTGTTGCTTCTTCATCTTGTTTATGTGTTAGATTAACATCAGATGATTTAAGTCACAGCTTCAATGTTCTTGACTATGGTGCTGTTGGGAATGGCAAAAATGATGAATCAAGGGCTTTTATGGATGCATGGAAAGATGCATGTAGTGCAATTTATGAGAGTTCAACACTTCTTATACCTAAAGAAAAAACATTCATGTTGCAACCTATGTGGTTTATGGGTCCTTGCAATTCTCCAACTATTTATGTAAAGCTTGAGGGAATTATCATAGCTCCAAGCACCATTGAAGCTTGGAAATGGCCCAATGAGAATGATAGAGGCTCATGGATACGTTTCTCAGAGATAAGAGGGCTTGTTATTTATGGAGGTGGACTCATTGATGGCAAAGGTGCTCCATGGTGGGATTGCTATTCTAATGCCATGTGTGAAAGTGAAAATCCAACTGCTCTTCATTTTCACGCATGTGAAAATCTAATTCTAAGGGGATTAACTCATATCAACAGCCCAAGAAATCATATAAGTTTAAACGCATGTCATGGCTCACGAATCTCTAAATTGCATATTATCGCGCCAAATGAAAGCCCTAACACTGATGGAATTGACATTGCTGAATCAACCAACGTCATCATTGAGAATTCAAAGATGGAAACTGGTGATGATTGTATTGCAATTAATCATGGTTCCACATCGATTGATATTGTTGGCATTTTTTGTGGACCTGGCCATGGCATAAGTGTTGGGAGCCTAGGAAGAAATGGAGCTGAAGAATCAGTGGAAAAGATTTATGTGCGAAATTGCACCTTCAACAGAACAACAAATGGAGCCAGAATCAAGACATGGATGGGAGGAAATGGGTATGCAAGAAAAGTGACATTTGAGGATATCATACTTATTGAAGCTAACAATCCAGTGATTATTGATCAAGAATACAATCCATATGATAGTTTATACGGTAATGGTGTTAAAGTGAGTGATGTAACCTTTCGCAACATAAGAGGAACATCAATTTCTAAACATGCAATTCAATTACATTGTGATGGATCCATAAGTTGCACAAACATTATACTTGAAGGGATTAACATAACATCTTCAATAGGAGACGAAGTTCACGCATCATGCAAAAATGTAAATGGGATATGTACTTCATGTATTCCATATGTTCCATGTCTTTCTCAAGAATGA 1218 0.3695 MEVQFVVFVMFVIVASSSCLCVRLTSDDLSHSFNVLDYGAVGNGKNDESRAFMDAWKDACSAIYESSTLLIPKEKTFMLQPMWFMGPCNSPTIYVKLEGIIIAPSTIEAWKWPNENDRGSWIRFSEIRGLVIYGGGLIDGKGAPWWDCYSNAMCESENPTALHFHACENLILRGLTHINSPRNHISLNACHGSRISKLHIIAPNESPNTDGIDIAESTNVIIENSKMETGDDCIAINHGSTSIDIVGIFCGPGHGISVGSLGRNGAEESVEKIYVRNCTFNRTTNGARIKTWMGGNGYARKVTFEDIILIEANNPVIIDQEYNPYDSLYGNGVKVSDVTFRNIRGTSISKHAIQLHCDGSISCTNIILEGINITSSIGDEVHASCKNVNGICTSCIPYVPCLSQE 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00595 405 SMART pbh1 270 291 IPR006626 -
Vivi4g00595 405 SMART pbh1 217 238 IPR006626 -
Vivi4g00595 405 SMART pbh1 363 395 IPR006626 -
Vivi4g00595 405 SMART pbh1 330 357 IPR006626 -
Vivi4g00595 405 SMART pbh1 190 216 IPR006626 -
Vivi4g00595 405 PANTHER - 32 390 - -
Vivi4g00595 405 ProSitePatterns Polygalacturonase active site. 247 260 IPR000743 GO:0004650|GO:0005975
Vivi4g00595 405 Gene3D - 15 399 IPR012334 -
Vivi4g00595 405 Pfam Glycosyl hydrolases family 28 60 390 IPR000743 GO:0004650|GO:0005975
Vivi4g00595 405 SUPERFAMILY Pectin lyase-like 29 402 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00595 Vivi-Chr4 12838372 12843940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00595 33 390 Glycoside Hydrolase AT5G27530 47.091 3.23e-115 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00595 K01184 - gmx:732657 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00595 4 12838372 12843940 Vivi4g00595 4 12838372 12843940 ECH
Vivi4g00595 4 12838372 12843940 Vivi6g03486 6 127547967 127551840 PCT