Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00200 ATGTCGTTCCACAACAGCAGTTTCAAACTCTCACCAGAACTCCCTTTCAGCAACTCATCATCACCATTCTCACTCTTCAACCTTTCTCGCTCCTCTCACAATCTCTTTCTCTCTCATCCCAAATCCTCATTTCCTACTGTCACTTTCTCCTCTCTCAAAACCACCCATAATTCATCTCCCTCTCCCAACCCAACACCACCTTGGCTCACCAAAACCAATTCTCCCAAAAGGGTCTCTGAATCTACCGTCAAAGAACAATCTTCTCAAGTACAACCTAGTAAACACACAACCCCTGTTGAAAGAATTGTTTTTCGGTTGAGAAACCTAGGGTTAACTGAAGAAGATGAACCTCAACAACAAGAAGAACAGCATGAAGAAGAAGTTAAATTGAGTGCTACAACTGTTACTGGAGATGAGAAATTGAGTGAGTTATTGAAGATAAAATGGGTTCGTCCTGATGTTTTGTTGGATGAGGAGAATGAGGATGAAGAGGAGAAGTTGGTGGTTCCATGGAAGAGAGAGGAAGAAAGGGAAATGGGTGGTGGTGGTGGTGGTGAGGTTGAACAAGATGGGTTTAAGAAGAGGACTTTAAAGGCTCCATCTTTGGCTGAATTGACACTTGAGGATGAGTTGTTGAGGAGGTTGAGGAGAGAGGGAATGCATATTAGGGAGAGGGTTAGTGTTCCAAAAGCTGGACTTACACAAGAGGTTATGGAGAAGATTCATGAGACGTGGAGGAAAGAGGAGTTGGTTAGACTTAAGTTTCATGAGGAACTTGCTAAGAATATGAGGATTGCTCATCAGATTGTTGAGCGTCGAACAGGAGGATTGGTTACATGGAAAGCGGGAAGTGTTATGATGGTGTATCGTGGTAAAAATTATCAAGGTCCTGCCTCACCGAAGGAACTCGATGTGAGAGAAGGGGATGGCTTTTTTGTGCCAGATGTCTCATCGGGAGGTTTGTCGAAAACAGAAGACAGTAATGCAGCCTCATCACTTGGAAACGGTGAGTCGGTTAGGAGGAACAGCAAACTGCCTGAGAACATGACAAGAGAGGAAGCAGAGTACAATGCGCTGCTTGATGGTTTAGGACCTCGATTTGTTGAATGGTGGGGTACAGGAATACCTCCGGTTGATGCTGACTTATTTCCGCCTGTTGTTCCTGGTTATAAAACACCTTACAGGCTTCTACCTACTGGAATGCGTTCTCGGCTAACAAGTGCAGAATTGACTGATTTGAGGAGAATCGCAAAGTCACTTCCTAGTCATTTTGCCTTAGGGAGAAATAGAAATCACCAAGGCCTAGCATGTGCTATTCTTAAGCTTTGGGAAAAGAGTTTAATCGCAAAGATTGCTGTTAAACCCGGTATCCAGAACACAAACAATAAACTAATGGCTGACGAACTTAGTGCATTAACAGGAGGTACCTTGCTGCTAAGGAATAAATATTTCATTGTTATTTATCGTGGGAAGGACTTTGTTCCAACAGGCGTGGCGGAAGTTTTGGCTGAAAGACAGGAATTGACGAAACAGGTACAGGATGTTGAAGAGAAAGTGCGGTGCAGAGCCGTTGCCGTGACTCCATCTGGACAAGGTGAAGCAACAGCACCGGCAGGATCTTTAGCAGAGTTCTATGAGGCTCAGGCTCGTTGGGGAAGGGATGTATCTAGTGAAGAGCGTGAGAGGATGGTAGAAGAAGCTACCAAAGCTAAGAATGTTAAGATTGTCAAACAAATCGAGCACAAACTCTCTCTTGCCGGGACCAAAATTCTTAGAGCCGAAAAGCTGTTAGCCAAAATAGAATCATCCATGGTTCAAGCTGGTCCTGATTATGACCAGGAAATAATCACGGACGAAGAACGTGTCGTGTTCCGCAGGATTGGTTTAAGAATGAAGCCATACTTACCACTTGGTATACGCGGTGTTTTTGGCGGTGTCATTGAGAACATGCATTTGCATTGGAAACATCGAGAACTTGTAAAATTGATAACAAAGCAAAAAACTCTTGCTTTCGTCGAAGACACGGCAAGGCTACTTGAATACGAGAGTGGTGGAATACTAGTGGCAATAGAGAAAGTTTCTAAAGGATTTGCTCTTATTTACTATCGCGGTAAAAACTATAAGCGGCCCATTACTTTAAGACCTAGAAACCTTCTAACAAAGGCAAAGGCATTGAAGCGTTCCGTAGCCATGCAACGCCACGAGGCTTTGAGTAACCATATTACAGAATTGGAAACAACAATTGAGCAGATGAAACAAGAACTTGGTCTATCTGAAGATGATAGGAGCGTGAAGGAAGTGCATGAAAACCAATTAGACCAAATCTCAGAACTCACCGACAGTGAAGATGATGAAGATTCGGATGATTTTGAGGACGAGGAAGATGCTGGTTGGGATGAAGACGAGAACTCCGAGTTTTCAGAACTCGAAGTCAATGAGCATCCTTGA 2448 0.4367 MSFHNSSFKLSPELPFSNSSSPFSLFNLSRSSHNLFLSHPKSSFPTVTFSSLKTTHNSSPSPNPTPPWLTKTNSPKRVSESTVKEQSSQVQPSKHTTPVERIVFRLRNLGLTEEDEPQQQEEQHEEEVKLSATTVTGDEKLSELLKIKWVRPDVLLDEENEDEEEKLVVPWKREEEREMGGGGGGEVEQDGFKKRTLKAPSLAELTLEDELLRRLRREGMHIRERVSVPKAGLTQEVMEKIHETWRKEELVRLKFHEELAKNMRIAHQIVERRTGGLVTWKAGSVMMVYRGKNYQGPASPKELDVREGDGFFVPDVSSGGLSKTEDSNAASSLGNGESVRRNSKLPENMTREEAEYNALLDGLGPRFVEWWGTGIPPVDADLFPPVVPGYKTPYRLLPTGMRSRLTSAELTDLRRIAKSLPSHFALGRNRNHQGLACAILKLWEKSLIAKIAVKPGIQNTNNKLMADELSALTGGTLLLRNKYFIVIYRGKDFVPTGVAEVLAERQELTKQVQDVEEKVRCRAVAVTPSGQGEATAPAGSLAEFYEAQARWGRDVSSEERERMVEEATKAKNVKIVKQIEHKLSLAGTKILRAEKLLAKIESSMVQAGPDYDQEIITDEERVVFRRIGLRMKPYLPLGIRGVFGGVIENMHLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIEKVSKGFALIYYRGKNYKRPITLRPRNLLTKAKALKRSVAMQRHEALSNHITELETTIEQMKQELGLSEDDRSVKEVHENQLDQISELTDSEDDEDSDDFEDEEDAGWDEDENSEFSELEVNEHP 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00200 815 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 41 794 IPR045278 GO:0000375|GO:0003729
Vivi4g00200 815 SUPERFAMILY YhbY-like 206 298 IPR035920 -
Vivi4g00200 815 Gene3D - 615 717 IPR035920 -
Vivi4g00200 815 Gene3D - 404 496 IPR035920 -
Vivi4g00200 815 Gene3D - 205 304 IPR035920 -
Vivi4g00200 815 MobiDBLite consensus disorder prediction 758 775 - -
Vivi4g00200 815 MobiDBLite consensus disorder prediction 316 345 - -
Vivi4g00200 815 ProSiteProfiles CRM domain profile. 205 301 IPR001890 GO:0003723
Vivi4g00200 815 ProSiteProfiles CRM domain profile. 614 714 IPR001890 GO:0003723
Vivi4g00200 815 Coils Coil 498 518 - -
Vivi4g00200 815 SMART CRS1_YhbY_2 207 290 IPR001890 GO:0003723
Vivi4g00200 815 SMART CRS1_YhbY_2 616 703 IPR001890 GO:0003723
Vivi4g00200 815 SMART CRS1_YhbY_2 405 489 IPR001890 GO:0003723
Vivi4g00200 815 MobiDBLite consensus disorder prediction 70 96 - -
Vivi4g00200 815 FunFam CRS2-associated factor 1, chloroplastic 404 500 - -
Vivi4g00200 815 SUPERFAMILY YhbY-like 405 495 IPR035920 -
Vivi4g00200 815 Coils Coil 734 761 - -
Vivi4g00200 815 ProSiteProfiles CRM domain profile. 403 500 IPR001890 GO:0003723
Vivi4g00200 815 MobiDBLite consensus disorder prediction 51 97 - -
Vivi4g00200 815 MobiDBLite consensus disorder prediction 320 343 - -
Vivi4g00200 815 MobiDBLite consensus disorder prediction 776 807 - -
Vivi4g00200 815 Pfam CRS1 / YhbY (CRM) domain 405 489 IPR001890 GO:0003723
Vivi4g00200 815 Pfam CRS1 / YhbY (CRM) domain 617 692 IPR001890 GO:0003723
Vivi4g00200 815 Pfam CRS1 / YhbY (CRM) domain 208 290 IPR001890 GO:0003723
Vivi4g00200 815 SUPERFAMILY YhbY-like 615 713 IPR035920 -
Vivi4g00200 815 MobiDBLite consensus disorder prediction 758 815 - -
Vivi4g00200 815 FunFam CRM-domain containing factor CFM3B, chloroplastic 615 717 - -
Vivi4g00200 815 FunFam CRS2-associated factor 1, chloroplastic 206 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00200 Vivi-Chr4 3538047 3542643 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00200 - - gmx:100808013 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00200 4 3538047 3542643 Vivi4g00200 4 3538047 3542643 ECH
Vivi5g06401 5 170588036 170589413 Vivi4g00200 4 3538047 3542643 PCT