Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05404 ATGGATTCTCCACAATCTGTTGTGTCACCCTTTAGAACCTCAATCTTGGGTGAGGGTGAGAAGCACAAGGATGTTTTCGCGCAAGGCAACAGTCCTTCGTCTAAGGAGATTGAAGTCAACGGGAAGGAAACTATCATGTCAAATGCCGAGGAATGTGTTGGAGTGCTTGACGTTTACATACATCAAGCTAGGGATATTCAGAACATCTGCATATACCATAAGCAAGATGTTTATGCTAAGATTTGCCTGACGAGTAATCCTGAGAACGCGGTTTCTACAAAGACTATTAATGGAGGTGGAAGGAACCCTGTGTTTAATGACAATCTTCGTCTCAATGTTGGGAACGTTGATTCGTCTCTTAAATGTGAGTTATGGATGCTGAGCAGGGTGAAGAATTATCTCGAAGATCAGTTGCTTGGTTTTGCTTTGGTGCCGTTGTCTGAAGTAATAGTTCAGAATGGGAAGCTAGAGAAAGAGTTCTCTCTTTCTTCGACTGATCTATTTCATTCTCCTTCAGGGTTTGTTCAGTTGTCAATTGGTTATACTGGTGCTACGCCTGATGTTATGGCGATATCGGCTATACCTAGTGAGGAGGCCGCACGTGCTGCTTTGCAGAACTCGGAAACAGCCGAGTCATTGGCCAGAGATTTGGGTAAAATTGAGTTTCCAGATCCTAAGATTGCAAATGAAGATCATTTAATGGTTTCAGAATATTTTGGCATTTCGTGCGAGGAGAGTCAGTGCTCTGATAGCTTGGCCAATTCTGATGCTGAAAATCATAGTTCTGAAGCAGGTGTTCGTCTCGTGGAAAGTTTCTCAGCATGTAGCGGTGAGTCTGTGCAAGTGCAATCTCCTAAGGTTGATTCTCCACCGAGCAGTGTGTCGACAAATGGGGTTTCTTCTCCTTCTGCACCTGAAAGCTCAGAATCATCTGATGCTGCTGCAGCTTCTAAGTCCCCTGGTGATGAACAAGTTTCAGGCACAAAAGAGGTACAAAAAGTGGATGTCAAAGACGGTGAGAGTGATTCGTCAAGTGTTGTTCCGAATGAATTACTCCCTAACCCTATTGTAACTGTCAACATAGAGCCAGAGCCGACGATGGTGCAGCAGGATATCGTTGATATGTACATGAAAAGTATGCAGCAATTTACCGAGTCATTAGCAAAAATGAAGCTTCCGATGGACATTACTAATGAACCAACTAATTCAGGAAATTCAAGCACCGAGCAGAAACTACCACAATCTAAGAATGCTAACTCCCGTGTCTATTATGGGAGCAGAGCTTTCTTCTGA 1293 0.4354 MDSPQSVVSPFRTSILGEGEKHKDVFAQGNSPSSKEIEVNGKETIMSNAEECVGVLDVYIHQARDIQNICIYHKQDVYAKICLTSNPENAVSTKTINGGGRNPVFNDNLRLNVGNVDSSLKCELWMLSRVKNYLEDQLLGFALVPLSEVIVQNGKLEKEFSLSSTDLFHSPSGFVQLSIGYTGATPDVMAISAIPSEEAARAALQNSETAESLARDLGKIEFPDPKIANEDHLMVSEYFGISCEESQCSDSLANSDAENHSSEAGVRLVESFSACSGESVQVQSPKVDSPPSSVSTNGVSSPSAPESSESSDAAAASKSPGDEQVSGTKEVQKVDVKDGESDSSSVVPNELLPNPIVTVNIEPEPTMVQQDIVDMYMKSMQQFTESLAKMKLPMDITNEPTNSGNSSTEQKLPQSKNANSRVYYGSRAFF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05404 430 CDD C2 56 162 - -
Vivi3g05404 430 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 185 IPR035892 -
Vivi3g05404 430 ProSiteProfiles C2 domain profile. 41 160 IPR000008 -
Vivi3g05404 430 PANTHER EXPRESSED PROTEIN 1 430 - -
Vivi3g05404 430 MobiDBLite consensus disorder prediction 395 430 - -
Vivi3g05404 430 Pfam C2 domain 54 161 IPR000008 -
Vivi3g05404 430 MobiDBLite consensus disorder prediction 280 326 - -
Vivi3g05404 430 Gene3D C2 domain 49 212 IPR035892 -
Vivi3g05404 430 MobiDBLite consensus disorder prediction 396 422 - -
Vivi3g05404 430 SMART C2_3c 55 158 IPR000008 -
Vivi3g05404 430 MobiDBLite consensus disorder prediction 280 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05404 Vivi-Chr3 111149315 111151944 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05404 - - gmx:100796499 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05404 3 111149315 111151944 Vivi3g05404 3 111149315 111151944 ECH
Vivi3g05404 3 111149315 111151944 Vivi7g02658 7 90440604 90442574 PCT