Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04509 ATGGAAGGAAAAACCAATAAGAACAAAGTGGAAAAAGTTGAACTAGGCTGTAGTTTCATGGCCAAAATCTTCAAACTCAAAGCCTACAAGCTCAAAAATTCATCATCTGTTCATTCACTGCCCATCAAGCCAATTAACAATCCACAACTGAATGAGTCCAAAGGGTCACCAAATCACATCTCAAAAGTTCCAACAGAGTCTCCACCAGTAAAAAATCACTCACCTTTAGATTCTGCCAGAAGCTCAATTCAACAGAGAGAGGTTAATGGAAATTCCTTAGGACTTGCAAGAATAAGCACTTCTAGTCGTGGTCATCGCGACACCGAAAACAAGTCGCCGAGCAAAGATTTAAACTCAATAAAACTCACTGGGAATTTGCTTATGAATAGTAGCTATATAAGTCCAAGAACAATTGTTACAAAGGTTAATAAAGAGATGAATTCTGTGAGTAACGGTGTTATGGGGAATATAATAAGGAAAAGTGGTGATGGTGTGTCGCAATTTCGGAGTCCTAGGAGTAACAGAGTAACTGATCCTGAGGTGTTGAAGTCGATGGGAAATGAAGCTTACAAGCAAGGAAGATTTTCTGAGGCTTTGGCTTTGTATGAAAGAGCTATTGCTATTGATTCCAATAAGGCAACTTATCATTGTAACAAGAGTGCTGCTTTAATTGGTTTGGGAAGGTTTCAAGAAGCAATTGTTGAGTGTGAGGAAGCTATTAGGATTCAACCTAACTATGCTCGAGCTCATAGTCGTTTAGCAACAATATACTTCAGGTTGGGAGAAGTTGAAAAGGCATTAAATTGCGATAAAGAAACTCCATACTTTGATTCAGATCTTGCTTTCAAAGCACATGCTCTTCAACTTCACCTTAACAAATGCAATGAAGCAAGAAAAGTCAATGATTGGAAATTTATATTGACAGAAACAAAGTCTGCAATATCCTTAGGTGTAGATTCAGCTCCAAAGGTCTATGCTTTACAAACTGAAGCTTTGCTGAAACTTCTGAGGCATCAAGAAGCATATGCCACCTATGAAAAAATGCCAAAATTTGACCATGATTGGTGCAATAAATTATTTGGACCAGTTTCTAGTGCTTACTTTCTGATGATAGGAGCACAAGTTTACCTAGCAACCGGCAGGTTTGAGAATGCTGTGACAGCATCACAACAAGCATCTAAGCTTGATCCAAGTAACAGTGATGTGAATGCGGTGGTAAGAAGGGCAAGAGCCGCGACATCTGCAAGATTGAGCGGTAACTTGCTCTTCAAGGCATCAAAGTTCACGGAAGCGTGCGCGGTATACAATGAAGGACTAGAGCATGATCCATTCAACTCCGTCCTGCTATGTAACAGGGCGGCATGTCGCTCTAAGCTAGGTCAATTCGAGAAAGCAATTGAAGATTGCAATGTAGCTCTTAAAGTTCAGCCGAGTTATAGCAAGGCAATGTTGCGTCGCGCTGATTGCAACGCCAAGTTGGAAAGATGGGAAGCTGCAATTCAAGACTATGAAATGTTGATTAGAGAAAAGCCGGGGGACGAGGAAGTTGCTAGGGCGTTGTTTGAGATTCAGCTAAAACAAAAGATGTTGCGCGGCGAAGATATCAAGAACTTGAAGTTTGGTTCAAATTTGGTTTGCATCTCAAGCAATGATAGGTTTAGACATTATGTAACTTCACCTGGTATGTCTGTAGTGCTTTTTTGCAACAAGGGCAAAGCAACTCATAAGCAAATTTTGTTGGTGTTGGAGCAAACATGCAAGAGATTCCCATCAGTTAATTTCCTTAAGGTGGAGATTGAGGACCATCCTTACTTGACAAAATCAGAAGGTGTAAACACCATTCCAGCTTTCAAAATATACAAGAATGGATCAAGAGTTAAAGAAATTTCTGGCAACGACCATGAGTTGTTAGAAAGATCAGTTAAATTATATAGCAGCTGA 1941 0.3993 MEGKTNKNKVEKVELGCSFMAKIFKLKAYKLKNSSSVHSLPIKPINNPQLNESKGSPNHISKVPTESPPVKNHSPLDSARSSIQQREVNGNSLGLARISTSSRGHRDTENKSPSKDLNSIKLTGNLLMNSSYISPRTIVTKVNKEMNSVSNGVMGNIIRKSGDGVSQFRSPRSNRVTDPEVLKSMGNEAYKQGRFSEALALYERAIAIDSNKATYHCNKSAALIGLGRFQEAIVECEEAIRIQPNYARAHSRLATIYFRLGEVEKALNCDKETPYFDSDLAFKAHALQLHLNKCNEARKVNDWKFILTETKSAISLGVDSAPKVYALQTEALLKLLRHQEAYATYEKMPKFDHDWCNKLFGPVSSAYFLMIGAQVYLATGRFENAVTASQQASKLDPSNSDVNAVVRRARAATSARLSGNLLFKASKFTEACAVYNEGLEHDPFNSVLLCNRAACRSKLGQFEKAIEDCNVALKVQPSYSKAMLRRADCNAKLERWEAAIQDYEMLIREKPGDEEVARALFEIQLKQKMLRGEDIKNLKFGSNLVCISSNDRFRHYVTSPGMSVVLFCNKGKATHKQILLVLEQTCKRFPSVNFLKVEIEDHPYLTKSEGVNTIPAFKIYKNGSRVKEISGNDHELLERSVKLYSS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04509 646 Pfam Tetratricopeptide repeat 458 513 - -
Vivi3g04509 646 Pfam Tetratricopeptide repeat 373 445 - -
Vivi3g04509 646 SUPERFAMILY Thioredoxin-like 527 637 IPR036249 -
Vivi3g04509 646 MobiDBLite consensus disorder prediction 37 117 - -
Vivi3g04509 646 Gene3D Glutaredoxin 537 645 - -
Vivi3g04509 646 SMART tpr_5 412 445 IPR019734 GO:0005515
Vivi3g04509 646 SMART tpr_5 446 479 IPR019734 GO:0005515
Vivi3g04509 646 SMART tpr_5 480 513 IPR019734 GO:0005515
Vivi3g04509 646 SMART tpr_5 366 399 IPR019734 GO:0005515
Vivi3g04509 646 SMART tpr_5 179 212 IPR019734 GO:0005515
Vivi3g04509 646 SMART tpr_5 213 246 IPR019734 GO:0005515
Vivi3g04509 646 SMART tpr_5 247 280 IPR019734 GO:0005515
Vivi3g04509 646 CDD TRX_family 553 642 - -
Vivi3g04509 646 Coils Coil 486 506 - -
Vivi3g04509 646 Gene3D Tetratricopeptide repeat domain 177 531 IPR011990 GO:0005515
Vivi3g04509 646 ProSiteProfiles TPR repeat profile. 179 212 IPR019734 GO:0005515
Vivi3g04509 646 SUPERFAMILY TPR-like 416 528 IPR011990 GO:0005515
Vivi3g04509 646 MobiDBLite consensus disorder prediction 37 101 - -
Vivi3g04509 646 Pfam Thioredoxin 550 635 IPR013766 -
Vivi3g04509 646 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 48 642 IPR044534 -
Vivi3g04509 646 Pfam TPR repeat 186 218 - -
Vivi3g04509 646 Pfam TPR repeat 226 261 - -
Vivi3g04509 646 SUPERFAMILY TPR-like 178 401 IPR011990 GO:0005515
Vivi3g04509 646 ProSiteProfiles TPR repeat profile. 366 399 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04509 Vivi-Chr3 81721408 81725286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04509 191 510 Glycosyltransferase AT3G04240 21.493 2.16e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04509 K09527 - gmx:100787041 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04509 3 81721408 81725286 Vivi3g04509 3 81721408 81725286 ECH
Vivi7g01146 7 59322435 59325862 Vivi3g04509 3 81721408 81725286 PCT