Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04332 ATGGAGAACCCTAACAATGCCAACACCCATCAACCCCAACGCCCTACCGAAGAAAACAACGACGACATCGACGAACAAGAAGACGAAGACGACGAGGAAGACGAAGACTACATCGATGATTCCGACTCACCGACTCCCCTAATCCCCCAATCCCCAATCGCCCGTTTGCGAGAGCAGAAATTCAAACTTGAAACCCTTTCCCGCCGACTCTCATCGGAACTTGTCCCTATCCGAGTCCACGACGTCATAATTCGCGGCAACACGGCCACCAAGGACTGGGTGATCGAAGCGGAACTCAAGGGAATCGAGGATGTTACCACCATGCAGGAACTCATTCGTGAATCGGAAATCGCACTTGCGAGGCTTCAGAGCCTTGGGGTTTTTGAATCGACTAAGGTTAGTCTTGAACCGGGTCCGCCGGAGCTGCCTAACACTGCCAATGTCGTCATCAACATCGTTGAGGCTGTTAACAAAGTCTCTGGTGAATTTGGTGTTTATACCAAACCCTCGACCAGTTCTTGGACTGCTGAAGGTACTCTTAAGTACAAAAATCCATTAGGTTATGGTGATCTATGGGATGCTTCTGTGGCTTACGGTGCTAACCAAGCAACAGAGGTGAGTGTGGGGTTATATGTTCCTCGACTTAAAGCAACTTCAACTCCCATTGCAGCACGTCTGTCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCTTACAAAGAGCAATCGTTGGGCATGTCTCTTGGCTTAATCTCAACAAAGCACCATGATTTAGCATACACTCTTGGATGGCGTACCTTAACAGATCCATTACAAATGTCATCCAGGTCTGTAAGGAGGCAGCTCGGCCATGGTTTGCTTTCATCTTTGAAGTATACATTTAAAATTGATAGGAGAAACTCACCAATTAGGCCAACAAAAGGACATGCTTTTGTTTCTTCCACTCACCTTGGCGGCCTTACACCAGATCATCGCAGCTTGCGGTTTTTGCGTCAGGAGTTTGATGTTCGGTATGCTGTTCCCTTTGGGTTTTATAATACAGCACTGAACCTAGGGATTTCTGCTGGTGCTGTTTTTCCATGGGGACATGATTTCAGGAACAAGCCATCTCCCCTTCCTGAAAGATTTTATTTGGGTGGTGATTTCTCTCCAATTTGCACCCTAGGAGGGCCAATGACATTATGGGGATTTAAAACCAGGGGATTAGGTCCTGCTGAACCACGAAGACAAAGCAGAGATGTATTCAATGATGACAATAATGATTCCTCTAAATGGGACTTCGTTGGAGGAGATCTTGCTGTTACAGCTTTTGCAGATCTCTCTTTTGATCTTCCGATTAGGTGGTTAAGAGAACATGGGGTTCATGGCCATGTTTTTGCTGGTGCAGGGAATACTGCTAAATTAACTCAGAATGAATATAAGCACTTCTCCCCTCAGAGATTCTTAGAATCCTTCCGAACATCAGTTGGATGTGGATTTGTTGTTCCTACTAGTCTTTTCCGCCTAGAGGGTAACTACTACTACATACTCAGGCAGAATGAACATGATCGTGGTAAAACTGGATTCAGGTTCAGCTTCTCAGCTCCTTCATAG 1593 0.4595 MENPNNANTHQPQRPTEENNDDIDEQEDEDDEEDEDYIDDSDSPTPLIPQSPIARLREQKFKLETLSRRLSSELVPIRVHDVIIRGNTATKDWVIEAELKGIEDVTTMQELIRESEIALARLQSLGVFESTKVSLEPGPPELPNTANVVINIVEAVNKVSGEFGVYTKPSTSSWTAEGTLKYKNPLGYGDLWDASVAYGANQATEVSVGLYVPRLKATSTPIAARLSMLSQDWQEFSSYKEQSLGMSLGLISTKHHDLAYTLGWRTLTDPLQMSSRSVRRQLGHGLLSSLKYTFKIDRRNSPIRPTKGHAFVSSTHLGGLTPDHRSLRFLRQEFDVRYAVPFGFYNTALNLGISAGAVFPWGHDFRNKPSPLPERFYLGGDFSPICTLGGPMTLWGFKTRGLGPAEPRRQSRDVFNDDNNDSSKWDFVGGDLAVTAFADLSFDLPIRWLREHGVHGHVFAGAGNTAKLTQNEYKHFSPQRFLESFRTSVGCGFVVPTSLFRLEGNYYYILRQNEHDRGKTGFRFSFSAPS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04332 530 MobiDBLite consensus disorder prediction 1 53 - -
Vivi3g04332 530 FunFam Outer membrane OMP85 family protein 76 155 - -
Vivi3g04332 530 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 166 528 - -
Vivi3g04332 530 Gene3D membrane protein fhac 76 155 - -
Vivi3g04332 530 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 19 527 IPR039910 -
Vivi3g04332 530 Pfam Surface antigen variable number repeat 77 154 IPR010827 GO:0019867
Vivi3g04332 530 MobiDBLite consensus disorder prediction 20 41 - -
Vivi3g04332 530 FunFam Outer membrane OMP85 family protein 166 528 - -
Vivi3g04332 530 ProSiteProfiles POTRA domain profile. 77 155 IPR034746 -
Vivi3g04332 530 Pfam Omp85 superfamily domain 184 527 IPR000184 GO:0019867
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04332 Vivi-Chr3 77939976 77943455 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04332 K07277 - gmx:100785408 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04332 3 77939976 77943455 Vivi3g04332 3 77939976 77943455 ECH
Vivi3g04332 3 77939976 77943455 Vivi7g02184 7 84557802 84562675 PCT