Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04306 ATGACTTCCAAACCAAAAAAACAAACTTACAGCGTCTGTTTTTGCTGCCGGCGCCGATTCAAACTCGGCGTATCAGAAGCACCGCCGCAGATAAAGGAACTCTATGACAATTACTCCGATGAGAACGCCATCATGACCGCATCTCATCTTCAAAGGTTCCTCGTCGAGGTGCAGGGAGATAAGAACTTCACAGAGAATGAAGCACAATCCATCATCGACGGTCATAAGCATTTGAGTATCTTCCATCGAAGAGGTCTCAATCTCGAAAGCTTCTTCAAGTTTCTCTTCAGTGATAATAACCCTCCCCTCTTACCTTCTCGCGGGGTGCATCAAGATATGAGTTTACCGTTGTCTCATTATTACATACACACTGGTCATAATTCCTATCTTACTGGAAATCAGCTTAGTAGTGATTGCAGTGATGCTCCTATCATCCTTGCGCTTCAGAGAGGGGTTAGGGTTATTGAGTTGGATATATGGCCTAATGGATCTAAGGATGATATTGAAGTTCTTCATGGAAGGACATTGACTACTCCTGTCGCGCTTATCAAATGTTTGAGGTCTATTAAGGAGCATGCGTTCGTGGCGTCGGAGTATCCGGTTGTGATAACATTAGAAGACCATCTTACTCCTGATCTTCAGGCCAAAGTGGCTCAGATGGTTACTCAAACATTTGGAGACATACTATTTTGTCCGAGCTCGGAAAGCTTGAAGGAATTTCCTTCGCCCGACTCGCTCAAAAAGAGGATTATCATATCAACAAAACCACCTAAAGAGTACCTTGAGGCAAAAGAAGGCCAGGAAAAAGAGGAATCAGTTAAGGGAAAGTCTTTAGGTGATGAAGAAGCTTGGGGCAAAGAAGTCCCTAGTTTGAGAGGCGGTACCATATCTGATTACAAGCAGAACAGTGGCGGCGACGATGAAGATGATCTTAATGAGGAGGAAGATTCTGATGAAGAAGAAAAGCCACGTCAAAATGTTTCAGATGAATATAGACGTTTAATTGCTATTCATGCTGGGAAACCTAAAGGTGGACTAGTGGAAGGTCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGTCACAGCTTGAAAAGGCAGCTGAAACATATGGAAAAGAAATTGTCAGGTTTACTCAGAGGAATATACTGAGAGTGTATCCGAAAGGTACTCGCATTACCTCTTCAAATTATAATCCATTAATTGGGTGGATGCACGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGAAGATCTCTTTGGTTGATGCAAGGAATGTTCAAAGCCAATGGAGGCTGTGGTTTTGTTAAAAAACCAGATTTTCTATTAAAAACTGGTCCCAATAATGAGGTTTTTGATCCTAAAGCTTCTTTGCCATTGAAAACTACTTTGAAGGTGACTGTATATATGGGGGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAATTCTCACCTCCAGACTTCTATACAAGGGTGGGGATTGCTGGAGTCCCTTTTGACACTATTATGAAAAAAACTAAAACAAAAGAGGATAGTTGGTTGCCTTCTTGGAATGAGGTATTCGAGTTCCCGCTTTCAGTTCCGGAGTTGGCGCTGCTTCGTATAGAAGTTCATGAGTATGACATGTCTGAGAAGGATGACTTTGGTGGGCAAACATGTTTACCTGTGTGGGAACTAAGAAGTGGAATTCGAGCGGTTCCATTACATTCCCGCAAAGGAGTTAAATACAACAATGTAAAGCTTCTCATGCGCTTTGAGTTCATCTGA 1791 0.4221 MTSKPKKQTYSVCFCCRRRFKLGVSEAPPQIKELYDNYSDENAIMTASHLQRFLVEVQGDKNFTENEAQSIIDGHKHLSIFHRRGLNLESFFKFLFSDNNPPLLPSRGVHQDMSLPLSHYYIHTGHNSYLTGNQLSSDCSDAPIILALQRGVRVIELDIWPNGSKDDIEVLHGRTLTTPVALIKCLRSIKEHAFVASEYPVVITLEDHLTPDLQAKVAQMVTQTFGDILFCPSSESLKEFPSPDSLKKRIIISTKPPKEYLEAKEGQEKEESVKGKSLGDEEAWGKEVPSLRGGTISDYKQNSGGDDEDDLNEEEDSDEEEKPRQNVSDEYRRLIAIHAGKPKGGLVEGLKVDPDKVRRLSLSESQLEKAAETYGKEIVRFTQRNILRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGFVKKPDFLLKTGPNNEVFDPKASLPLKTTLKVTVYMGEGWYYDFKHTHFDQFSPPDFYTRVGIAGVPFDTIMKKTKTKEDSWLPSWNEVFEFPLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLHSRKGVKYNNVKLLMRFEFI 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04306 596 PRINTS Phospholipase C signature 407 425 IPR001192 GO:0035556
Vivi3g04306 596 PRINTS Phospholipase C signature 386 407 IPR001192 GO:0035556
Vivi3g04306 596 PRINTS Phospholipase C signature 562 572 IPR001192 GO:0035556
Vivi3g04306 596 PRINTS Phospholipase C signature 142 162 IPR001192 GO:0035556
Vivi3g04306 596 PRINTS Phospholipase C signature 116 134 IPR001192 GO:0035556
Vivi3g04306 596 PRINTS Phospholipase C signature 239 256 IPR001192 GO:0035556
Vivi3g04306 596 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 360 446 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vivi3g04306 596 FunFam Phosphoinositide phospholipase C 463 596 - -
Vivi3g04306 596 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 468 595 IPR035892 -
Vivi3g04306 596 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 111 255 - -
Vivi3g04306 596 MobiDBLite consensus disorder prediction 261 287 - -
Vivi3g04306 596 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 361 447 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vivi3g04306 596 SMART plcy_3 331 448 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vivi3g04306 596 SMART C2_3c 468 576 IPR000008 -
Vivi3g04306 596 Gene3D - 27 105 - -
Vivi3g04306 596 CDD PI-PLCc_plant 110 435 - -
Vivi3g04306 596 MobiDBLite consensus disorder prediction 261 330 - -
Vivi3g04306 596 SUPERFAMILY PLC-like phosphodiesterases 111 449 IPR017946 GO:0006629|GO:0008081
Vivi3g04306 596 Gene3D C2 domain 464 596 IPR035892 -
Vivi3g04306 596 SMART plcx_3 111 255 IPR000909 -
Vivi3g04306 596 Pfam C2 domain 469 569 IPR000008 -
Vivi3g04306 596 SUPERFAMILY EF-hand 21 113 IPR011992 -
Vivi3g04306 596 Gene3D Phosphatidylinositol (PI) phosphodiesterase 107 461 IPR017946 GO:0006629|GO:0008081
Vivi3g04306 596 Pfam Phosphatidylinositol-specific phospholipase C, X domain 113 255 IPR000909 -
Vivi3g04306 596 ProSiteProfiles C2 domain profile. 449 578 IPR000008 -
Vivi3g04306 596 Pfam Phosphoinositide-specific phospholipase C, efhand-like 30 97 IPR015359 -
Vivi3g04306 596 CDD C2_PLC_like 466 595 - -
Vivi3g04306 596 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 15 595 IPR001192 GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04306 Vivi-Chr3 77170837 77174377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04306 7 596 Acyl Lipid Metabolism Gene Families AT3G55940 68.581 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04306 K05857 - gmx:100784534 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04306 3 77170837 77174377 Vivi7g02138 7 83565014 83568416 ECH
Vivi3g04306 3 77170837 77174377 Vivi3g04306 3 77170837 77174377 ECH
Vivi3g04306 3 77170837 77174377 Vivi7g02138 7 83565014 83568416 PCT