Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04176 ATGGCGAATATTAGCATAGGCTCAAGATGGTCTCTCCAGGGAACCACTGCTCTAGTTACCGGTGGAACTCGTGGAATCGGCCATGCTGTGGTAGAGGAACTCGCTGAGTTTGGTGCCACAGTGTACACTTGTTCTAGGAACCAAAAAGAACTTAATAAATGCATAAATGAATGGAAAGGTAAGGGGTTTTCTGTTTATGGATCGACTTGCGATGCGTCTTCTTCTTCTCAAAGAAATGAGCTTATTCGACAAGTGGCTTCTACCTTCAACGGCAAGCTCAACATACTTGTAAACAATGCTGGTACAAATGTGAGGAAGCCAACAATTGAGTTCACAGCCGAAGATTATTCAAAAGTGATGACTACTAACTTGGATTCAGCATTTCATATATGCCAACTCGCATATCCTCTTCTTAAAGAATCCGGTAATGGAAGCATTGTGTTCATGTCCTCGGTTGCGTCTCTCACAAGCGTAGGTTCTGCATCCGTTTATGCAGTTAGTAAAGCTGCAATCAATCAGCTGACAAAAAATCTTGCTTGTGAATGGGCGAAAGACAATATAAGGAGCAACTGTGTTGCGCCCTGGTATACAAAAACATCGCTTGTGAAAAATTTTATCACCAACGAAGAGTTTGTGAATGAAATACTATCTCGAACACCGATAAAGCGGATAGCCGAAACACATGAAGTGTCTTCCTTGGTGGCTTTCCTTTGCCTGCCTGCGGCTTCTTACATCACTGGACAGACTGTTTCTGTTGATGGAGGATTTACTGTGAATGGATTTCAACCCAGCGTTAGAATAACCTAA 807 0.4263 MANISIGSRWSLQGTTALVTGGTRGIGHAVVEELAEFGATVYTCSRNQKELNKCINEWKGKGFSVYGSTCDASSSSQRNELIRQVASTFNGKLNILVNNAGTNVRKPTIEFTAEDYSKVMTTNLDSAFHICQLAYPLLKESGNGSIVFMSSVASLTSVGSASVYAVSKAAINQLTKNLACEWAKDNIRSNCVAPWYTKTSLVKNFITNEEFVNEILSRTPIKRIAETHEVSSLVAFLCLPAASYITGQTVSVDGGFTVNGFQPSVRIT 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04176 268 Gene3D - 5 260 - -
Vivi3g04176 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Vivi3g04176 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Vivi3g04176 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Vivi3g04176 268 PANTHER TROPINONE REDUCTASE 9 260 IPR045000 GO:0016491
Vivi3g04176 268 Pfam Enoyl-(Acyl carrier protein) reductase 23 257 - -
Vivi3g04176 268 FunFam Short-chain dehydrogenase reductase 1 262 - -
Vivi3g04176 268 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Vivi3g04176 268 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Vivi3g04176 268 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Vivi3g04176 268 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Vivi3g04176 268 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Vivi3g04176 268 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Vivi3g04176 268 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Vivi3g04176 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 259 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04176 Vivi-Chr3 73601105 73602378 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04176 6 263 Miscellaneous Gene Families AT2G29290 59.231 4.11e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04176 K08081 - gmx:100819646 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01931 6 86966881 86974361 Vivi3g04176 3 73601105 73602378 ECH
Vivi3g04176 3 73601105 73602378 Vivi3g04176 3 73601105 73602378 ECH