Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04161 ATGAACATGCCAACCTCTCCCCATGTTCTCCTTCTTCTTAGAGTTTTCATTTTCATCATGTTCCTTCAAATCCAAACAAGTACTTCTTTTTCTTCTCTTTCACCTCCCCCACAAAAACCTTTCATATTACCACTAAAACTCCAAACACTCCCACATGGCTCACTTTCACTTCCAACCCCTTCTTCACGTAAACTCTCTTTCCAACACAATGTAACCTTAACAGTCTCCCTTACATTAGGCTCACCCCCACAGAATGTTACCATGGTCCTCGACACAGGGAGTGAACTCTCATGGCTACACTGTAAAAAGCTTCCAAACTTAAACTCCATTTTCAACCCCCTCCTCTCTTCAACATACACCCCCACCCCCTGCACCTCACCCGTTTGTAAAACCCGAACCCGAGACTTCCCCGTACCCGTTTCATGCGATACCAAAAAACTCTGCCACGCCACAATCTCCTACGCCGACGCCTCCTACATCGAAGGCAACCTCGCCACCGAGACTTTCTTCGCCGGCGGGTCAGCACAACCCGGTACCATATTCGGGTGTATGGACTCCGGGTTCAGCTCCAACACAAACGAAGACTCCAAAACAACCGGGTTAATGGGTATGAACCGTGGCTCTCTCTCGTTTGTAACCCAAATGGGGTTACCTAAATTCTCGTACTGTATCTCCGGCAAAGACTCCACCGGCGTGTTACTTTTCGGCGAAGCAAACTTTAACTGGCTTGGACCATTAAAATACACACCCATGGTCAAAATGTCAATTCCATTACCGTATTTTGATCGAGTCGCATACACGGTGCGACTCGAGGGAATACGCGTCGGGAAGAAATTACTTCAGGTACCAAAAACAATCTTCGCACCGGATCACACCGGAGCGGGTCAAACAATGGTGGATTCGGGTACACAGTTTACCTTCCTTTTAGGACCGGTTTACACCGCATTACGAGAAGAATTCATTGCTCAAACAAAAGGGTCAATGACCCTTTTGAACGACACGAATTTCGTCTTCCAGGGAGCTATAGATTTGTGTTACAATCTCGGGTCGGGTCAAAAACCGGGTCGGGTGGGTCTTCCGGTGTTACCGGCGGTTACGCTTATGTTTGAAGGAGCGGAGATGAGTGTTTCAGGGGAGAGGCTATTGTATAGAGTAAGTGATGACGTGGCAAAATGGAAGAATGATTTGGTGTATTGTTTCACGTTTGGGAACTCTGACTTGTTGGGAATTGAGGCATACGTAATTGGACATTATCATCAAATGAACGTGTGGATGGAGTTTGATTTGGTCAACTCTAGAGTTGGATTTGCTGATACTAGTTGTGAGCTTGCAAGTCAACGATTAGGCATGGTTCCTTAG 1359 0.4673 MNMPTSPHVLLLLRVFIFIMFLQIQTSTSFSSLSPPPQKPFILPLKLQTLPHGSLSLPTPSSRKLSFQHNVTLTVSLTLGSPPQNVTMVLDTGSELSWLHCKKLPNLNSIFNPLLSSTYTPTPCTSPVCKTRTRDFPVPVSCDTKKLCHATISYADASYIEGNLATETFFAGGSAQPGTIFGCMDSGFSSNTNEDSKTTGLMGMNRGSLSFVTQMGLPKFSYCISGKDSTGVLLFGEANFNWLGPLKYTPMVKMSIPLPYFDRVAYTVRLEGIRVGKKLLQVPKTIFAPDHTGAGQTMVDSGTQFTFLLGPVYTALREEFIAQTKGSMTLLNDTNFVFQGAIDLCYNLGSGQKPGRVGLPVLPAVTLMFEGAEMSVSGERLLYRVSDDVAKWKNDLVYCFTFGNSDLLGIEAYVIGHYHQMNVWMEFDLVNSRVGFADTSCELASQRLGMVP 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04161 452 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 88 99 IPR001969 GO:0004190|GO:0006508
Vivi3g04161 452 SUPERFAMILY Acid proteases 74 441 IPR021109 -
Vivi3g04161 452 PANTHER ASPARTYL PROTEASE-RELATED 14 443 IPR001461 GO:0004190|GO:0006508
Vivi3g04161 452 FunFam Aspartic proteinase PCS1 241 445 - -
Vivi3g04161 452 Pfam Xylanase inhibitor N-terminal 75 236 IPR032861 -
Vivi3g04161 452 CDD pepsin_A_like_plant 72 441 IPR034161 -
Vivi3g04161 452 ProSiteProfiles Peptidase family A1 domain profile. 73 437 IPR033121 -
Vivi3g04161 452 Pfam Xylanase inhibitor C-terminal 265 437 IPR032799 -
Vivi3g04161 452 Gene3D Acid Proteases 243 446 IPR021109 -
Vivi3g04161 452 Gene3D Acid Proteases 65 236 IPR021109 -
Vivi3g04161 452 FunFam Aspartic proteinase PCS1 64 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04161 Vivi-Chr3 72969086 72970862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04161 59 252 Miscellaneous Gene Families AT1G44130 28.774 7.55e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04161 - - gmx:100783835 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04161 3 72969086 72970862 Vivi3g04161 3 72969086 72970862 ECH
Vivi3g04161 3 72969086 72970862 Vivi7g01767 7 76349855 76351814 PCT