Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi3g03963 | ATGGATCCCAATCCAGGAACCTTCCCGATTCTCTCTTACGTCATGTCCCGTTTCCCTTCCTTATCATCCCTAACCTCCGCCGCCACCGCCGCCACACACCCCGAAACCGAATTATACGACATCGACATCGAACAGCCACCCTCAGAAATCATCGGCAAAATGCCTAACCTAGCCGACCCCGAACTAATCGCCTCCATGGGCCGGGCCATCGCCAACGTTCATCAGGCCCGGTCCGTCCTCAACCTAATCGGCGAGCGGCCGACTCACGAGGAAATCGACCACGCCAAGGCCAAGCTCGCGGTGACTGAAGCCCAGCTATCCCGTCAGCTGGAAGAAATCGTGCACCAGCCGAGGCCGCCGGAGATCGAGATCCAAGGATGGCGGGCTCACCAAGCGGAGAAGGAGAAGGAGTGTAGGGAAGAGGCGGAGAAGGAGAAGCGGATTTGGAAATCGCTTATTCAGCTTGATGAGATGCATGAGGCTTATGAGAAGCTGCTTAAGGAGTCTGAGAAGCGGTTGGTTAAAATGTATGGTTCTGGTGGAGATGGTGATGTTGGAGGAGATGGTGATAATGGTGATGAGGTGAATGAAGAGGTTGTGGGGATTCTGCAGGAGGCGGATGGGAAAGGAATAGAGAGAATTGACCTTTCTGGCCGGTCATTGAAGATTTTGCCGGAAGCTTTTGGTCGGATTTCTGGTTTGCTTGTGCTTGACGTTTCAGCTAATCAGCTTTCGGCCATTCCCGACTCAATAGCTGGGTTGCAAAATCTGGAGGAGCTTAATCTCTCTGCAAATCTTTTGGAATCACTGCCCGATTCAATTGGGTTGCTGCAAAAGTTGAAATTGCTCAATGTTTCTGGAAACAAGCTTACTGCCCTTCCTGATTCCATTTGTCAGTGCAGGTCATTGGTGGAGCTGGATGCAAGCTTTAACAATCTGTCCTACTTGCCAACAAACATTGGGTATGAATTACCGAACTTGAAGAAACTCATAATTCATTTGAACAAAATCCGATCTCTTCCCTCGTCCATTTGTGAGTTGAAGTCGTTATGCTATTTGGATGCTCACTTCAATGAGCTACACGGGCTTCCAATAGCAATCGGGAGACTGACTAATCTGGAAGTTCTCAACTTGAGCAGTAACTTCACTGATCTTATAGAGCTTCCCGAGACATTTGGTGAATTGACTAATCTCAGGGAATTGGATCTCAGCAATAATCAGATTCATGCACTTCCCGATACATTCGGTTACCTTGATAATTTGACCAAGCTCAACTTGGAACAGAATCCTCTTGAAGTGCCACCTGTGGAGATTGTAAATCAAGGGGTGGAAGCCATATTGACTTTTATGACCAAGAGGTGGATTGATATCTTGCAAGAGGAAGAAAGTAAGAGCAATCAAGAAATGCAAGAACAAGTAGAGGGTGGCTGGTTAACTCGAAGCACGTCGTGGTTGAAGAATGTTTCTGGAAATGTAGCTGGGTATATCGGAACTACTGTTGGATCTCCCGTGTCACCCAAATCTCCCACTGAGGCATATCTTAATCAACAGCGATAA | 1557 | 0.4791 | MDPNPGTFPILSYVMSRFPSLSSLTSAATAATHPETELYDIDIEQPPSEIIGKMPNLADPELIASMGRAIANVHQARSVLNLIGERPTHEEIDHAKAKLAVTEAQLSRQLEEIVHQPRPPEIEIQGWRAHQAEKEKECREEAEKEKRIWKSLIQLDEMHEAYEKLLKESEKRLVKMYGSGGDGDVGGDGDNGDEVNEEVVGILQEADGKGIERIDLSGRSLKILPEAFGRISGLLVLDVSANQLSAIPDSIAGLQNLEELNLSANLLESLPDSIGLLQKLKLLNVSGNKLTALPDSICQCRSLVELDASFNNLSYLPTNIGYELPNLKKLIIHLNKIRSLPSSICELKSLCYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFTDLIELPETFGELTNLRELDLSNNQIHALPDTFGYLDNLTKLNLEQNPLEVPPVEIVNQGVEAILTFMTKRWIDILQEEESKSNQEMQEQVEGGWLTRSTSWLKNVSGNVAGYIGTTVGSPVSPKSPTEAYLNQQR | 518 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi3g03963 | 518 | Gene3D | Ribonuclease Inhibitor | 125 | 315 | IPR032675 | - | |
| Vivi3g03963 | 518 | MobiDBLite | consensus disorder prediction | 499 | 518 | - | - | |
| Vivi3g03963 | 518 | Coils | Coil | 92 | 112 | - | - | |
| Vivi3g03963 | 518 | Coils | Coil | 152 | 172 | - | - | |
| Vivi3g03963 | 518 | FunFam | Plant intracellular Ras-group-related LRR protein 2 | 319 | 492 | - | - | |
| Vivi3g03963 | 518 | SUPERFAMILY | L domain-like | 210 | 431 | - | - | |
| Vivi3g03963 | 518 | Pfam | Leucine rich repeat | 371 | 431 | IPR001611 | GO:0005515 | |
| Vivi3g03963 | 518 | Pfam | Leucine rich repeat | 256 | 313 | IPR001611 | GO:0005515 | |
| Vivi3g03963 | 518 | SMART | LRR_bac_2 | 395 | 414 | - | - | |
| Vivi3g03963 | 518 | SMART | LRR_bac_2 | 300 | 319 | - | - | |
| Vivi3g03963 | 518 | SMART | LRR_bac_2 | 254 | 273 | - | - | |
| Vivi3g03963 | 518 | SMART | LRR_bac_2 | 347 | 366 | - | - | |
| Vivi3g03963 | 518 | SMART | LRR_bac_2 | 277 | 296 | - | - | |
| Vivi3g03963 | 518 | SMART | LRR_bac_2 | 231 | 250 | - | - | |
| Vivi3g03963 | 518 | SMART | LRR_bac_2 | 370 | 391 | - | - | |
| Vivi3g03963 | 518 | SMART | LRR_bac_2 | 324 | 343 | - | - | |
| Vivi3g03963 | 518 | PRINTS | Leucine-rich repeat signature | 395 | 408 | - | - | |
| Vivi3g03963 | 518 | PRINTS | Leucine-rich repeat signature | 234 | 247 | - | - | |
| Vivi3g03963 | 518 | Gene3D | Ribonuclease Inhibitor | 320 | 477 | IPR032675 | - | |
| Vivi3g03963 | 518 | ProSiteProfiles | Leucine-rich repeat profile. | 279 | 300 | IPR001611 | GO:0005515 | |
| Vivi3g03963 | 518 | ProSiteProfiles | Leucine-rich repeat profile. | 256 | 277 | IPR001611 | GO:0005515 | |
| Vivi3g03963 | 518 | ProSiteProfiles | Leucine-rich repeat profile. | 397 | 418 | IPR001611 | GO:0005515 | |
| Vivi3g03963 | 518 | PANTHER | - | 211 | 321 | - | - | |
| Vivi3g03963 | 518 | FunFam | Plant intracellular Ras-group-related LRR protein 9 | 134 | 315 | - | - | |
| Vivi3g03963 | 518 | SMART | LRR_typ_2 | 301 | 323 | IPR003591 | - | |
| Vivi3g03963 | 518 | SMART | LRR_typ_2 | 231 | 253 | IPR003591 | - | |
| Vivi3g03963 | 518 | SMART | LRR_typ_2 | 277 | 300 | IPR003591 | - | |
| Vivi3g03963 | 518 | SMART | LRR_typ_2 | 395 | 417 | IPR003591 | - | |
| Vivi3g03963 | 518 | SMART | LRR_typ_2 | 324 | 347 | IPR003591 | - | |
| Vivi3g03963 | 518 | SMART | LRR_typ_2 | 254 | 276 | IPR003591 | - | |
| Vivi3g03963 | 518 | SMART | LRR_typ_2 | 370 | 394 | IPR003591 | - | |
| Vivi3g03963 | 518 | SMART | LRR_typ_2 | 418 | 441 | IPR003591 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi3g03963 | Vivi-Chr3 | 68738130 | 68741351 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi3g03963 | 224 | 439 | Receptor kinase-like Gene Family | AT3G51740 | 31.839 | 8.42e-15 | 75.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi3g03963 | - | - | gmx:100803823 | 787.334 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vivi3g03963 | 3 | 68738130 | 68741351 | Vivi3g03963 | 3 | 68738130 | 68741351 | ECH | |
| Vivi1g02189 | 1 | 45953114 | 45955908 | Vivi3g03963 | 3 | 68738130 | 68741351 | PCT |