Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02189 ATGGATCCCAACCCGGGGACATTCCCCATTCTCTCCTACGTCATGTCCCGTCTCCAATCTTTCAGATCTCCAACCCATCATGATTCCAAATCCGAATTCAATCCCGAACAACCACAATCTTCAGATCATTCATCTTCTCCTTCATCAATCGTAGGCCAAATGCCGAATCTCACCGACCCGAAATTATTGGCCTCCATGACCCAAGCCATCTCAGACGTCTCCCAGGCCCGATCAGTCCTCAAACTCATCGGCGACCGGCCCACACACGAGGAAGTCGACACCGCGAAGGCCAAACTGATCGACCTCGAGGCACATTTATTGCGCCAATTGGAGGAGATCGTGAGCCTCCCTAGGCCGCCTGAGATCGACGAACAACATTGGCGGGCTCATATTACGGAAAGAGAGACGCAATGTAGAGACTCTGCTGAAAAGGAGAAGCGTGTTTATAAGTCGCTGTTGCAAAGAGATGAGATGCATGATGCTTATGAGAAGCTTCTGAAGGATGCGGAGACAAGGCTTGTGAAGATTTATGAGGAGGATGATGGTGGTAATGGTAATGACGGTGATGCGGGCGAGGATGAAGGTGGAGAGCATGTTAAGAGGATGTTGCAGGAGGCACGTGAGAAAAATGTCGAGCGAGTGGATCTTAAGGGACAACGCTTGAAAGCCTTGCCTGAGGCCTTTTGCCAGATTTCTTCCTTGGTGGTGCTCAATCTCTCCACTAATCAGCTTGTGGTGATTCCTGACACAATATCTGGATTGCAAAATCTTGAGGAGCTTAATGTCTCTACCAATCTCTTGAAGTCACTTCCAGATTCAATTGGCTTCTTACATAAGTTGAAAATCCTCAATGTCTCTGGAAATAAGTTGACATCCCTTCCTGATTCCATCAGCCAGTGCAGATCGTTGGTGGAGCTGGATGCAAGCTTTAATAGCCTATCATATTTGCCAACAAACATCGGATTCGAATTACAGAAATTACAGAAGCTCCTGATTAGTTTAAACAAGATACGATCCCTTCCCTCGTCTGTTTGTGAAATGAAGTCATTGCGCCATCTAGATGCTCACTTTAACGAACTCCACGGCCTCCCTAACGCAATCGGGAAATTGACTAGTCTTGAAATTCTCAATCTGAGTAGTAACTTCAGTGACCTTCAAGAATTACCAGAGACTTTCGGCGATCTGAGTAACCTCAAGGAACTGGATCTTAGCAACAATCAAATTCACACACTTCCAGATACGTTTGGTCGCCTTCATAGTTTAATCAAGCTAAACTTGGAGCAGAACCCTCTTGAATTGCCACCTATGGAGATTGTAAATGAAGGTGTCCAAGTCATTAAGTCTTACATGGCTAAGAGGTGGATTGAGTTATTGGCGGCTGAGGAAGAGAGGAATAAGACGAATGAGATGCAAGATCAAGGACAGAGTGCTTGGTTAACCCGAAGTGCCTCTTGGTTGAAAAATGTTTCTGGAAATGTAACTGAGTATATTGGAAGTACCATGTCCCCGAAAGCGAGATCTCCGAGATCTCCCAGAGATAATTTTCTTAATCAGGAACTATGA 1563 0.4568 MDPNPGTFPILSYVMSRLQSFRSPTHHDSKSEFNPEQPQSSDHSSSPSSIVGQMPNLTDPKLLASMTQAISDVSQARSVLKLIGDRPTHEEVDTAKAKLIDLEAHLLRQLEEIVSLPRPPEIDEQHWRAHITERETQCRDSAEKEKRVYKSLLQRDEMHDAYEKLLKDAETRLVKIYEEDDGGNGNDGDAGEDEGGEHVKRMLQEAREKNVERVDLKGQRLKALPEAFCQISSLVVLNLSTNQLVVIPDTISGLQNLEELNVSTNLLKSLPDSIGFLHKLKILNVSGNKLTSLPDSISQCRSLVELDASFNSLSYLPTNIGFELQKLQKLLISLNKIRSLPSSVCEMKSLRHLDAHFNELHGLPNAIGKLTSLEILNLSSNFSDLQELPETFGDLSNLKELDLSNNQIHTLPDTFGRLHSLIKLNLEQNPLELPPMEIVNEGVQVIKSYMAKRWIELLAAEEERNKTNEMQDQGQSAWLTRSASWLKNVSGNVTEYIGSTMSPKARSPRSPRDNFLNQEL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02189 520 FunFam Plant intracellular Ras-group-related LRR protein 9 134 315 - -
Vivi1g02189 520 SMART LRR_typ_2 231 253 IPR003591 -
Vivi1g02189 520 SMART LRR_typ_2 277 300 IPR003591 -
Vivi1g02189 520 SMART LRR_typ_2 254 275 IPR003591 -
Vivi1g02189 520 SMART LRR_typ_2 370 394 IPR003591 -
Vivi1g02189 520 SMART LRR_typ_2 324 347 IPR003591 -
Vivi1g02189 520 SMART LRR_typ_2 395 418 IPR003591 -
Vivi1g02189 520 SMART LRR_typ_2 301 323 IPR003591 -
Vivi1g02189 520 MobiDBLite consensus disorder prediction 34 56 - -
Vivi1g02189 520 SMART LRR_bac_2 231 250 - -
Vivi1g02189 520 SMART LRR_bac_2 324 343 - -
Vivi1g02189 520 SMART LRR_bac_2 370 391 - -
Vivi1g02189 520 SMART LRR_bac_2 395 414 - -
Vivi1g02189 520 SMART LRR_bac_2 300 319 - -
Vivi1g02189 520 SMART LRR_bac_2 254 273 - -
Vivi1g02189 520 SMART LRR_bac_2 347 366 - -
Vivi1g02189 520 SMART LRR_bac_2 277 296 - -
Vivi1g02189 520 PRINTS Leucine-rich repeat signature 395 408 - -
Vivi1g02189 520 PRINTS Leucine-rich repeat signature 280 293 - -
Vivi1g02189 520 Coils Coil 159 179 - -
Vivi1g02189 520 PANTHER DISCS LARGE 209 440 - -
Vivi1g02189 520 SUPERFAMILY L domain-like 207 431 - -
Vivi1g02189 520 ProSiteProfiles Leucine-rich repeat profile. 279 300 IPR001611 GO:0005515
Vivi1g02189 520 MobiDBLite consensus disorder prediction 21 56 - -
Vivi1g02189 520 Pfam Leucine rich repeat 389 431 IPR001611 GO:0005515
Vivi1g02189 520 Pfam Leucine rich repeat 256 313 IPR001611 GO:0005515
Vivi1g02189 520 Pfam Leucine rich repeat 326 381 IPR001611 GO:0005515
Vivi1g02189 520 ProSiteProfiles Leucine-rich repeat profile. 397 418 IPR001611 GO:0005515
Vivi1g02189 520 MobiDBLite consensus disorder prediction 498 520 - -
Vivi1g02189 520 Gene3D Ribonuclease Inhibitor 148 382 IPR032675 -
Vivi1g02189 520 Gene3D Ribonuclease Inhibitor 383 445 IPR032675 -
Vivi1g02189 520 ProSiteProfiles Leucine-rich repeat profile. 256 277 IPR001611 GO:0005515
Vivi1g02189 520 FunFam Plant intracellular Ras-group-related LRR protein 2 319 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02189 Vivi-Chr1 45953114 45955908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02189 209 440 Receptor kinase-like Gene Family AT5G46330 34.586 1.16e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02189 - - gmx:100782818 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02189 1 45953114 45955908 Vivi1g02189 1 45953114 45955908 ECH
Vivi1g02189 1 45953114 45955908 Vivi3g03963 3 68738130 68741351 PCT