Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03864 ATGAAAATCATGGACTATCACTATGACACTCCCTCTTCCTCATCTCACTCCAACCACTCCCTCCAACTTGCAGGGTCAACATCCCTCTCTTCACAACGCAGCCTCCTCTCTGTTCCTTCCCTCAACTCTCACAATCTCAATCACCTTCATACTTCCCACCTCATCACAACCCTCAAATCCCATAACACATCATCCTACACATCCTCTCTCACCCTCTTCGGTAAATTCCTCCTCACCGGTTCATCCGACAGAGAAATCACAACCTGGAACATAACTACCTCGGACGAACAAAACTCAACAAACAAAGTCGTCGCAGGAAAAGGCGCTGTTAAATCCTTAGTTATCCAATCAAACATACACACAAACACAAACACCCTTTTCAGTGCTCATCAAGACCATAAAATCCGAGTTTGGAAACTAACCAACGACCAAAAATACACCCATTTAGCAACACTTCCAACACTCGGTGACCGTGCCTCCAAGATTTTAATCCCGAAAAACCATGTCCAAATTCGAAGACACAAAAAATGCACGTGGGTTCATCATGTCGACACTGTTTCTTCACTTGCTCTGTCTAAAGATGGAACCTTGTTGTACTCTGTTTCATGGGACAGAACAATCAAAATCTGGCGAACAAAAGACTTCACTTGCTTGGAATCAATAACAAACGCACATGATGACGCTATAAACGCGGTTGTAGTTTCTTACGACGGTGTTGTTTACAGTGGGTCAGCTGATAAGAGAATTAAAGTGTGGAAGAATCTTCAACATGATGAGAAACATAAACAGAAACACTGTTTGGTTGATACCTTGGAGAAACACAACTCAGGAATCAATGCTTTGGTTTTGAGCAGTGATGAATCTGTTCTGTATTCCGGTGCTTGTGATAGATCAATATTGGTTTGGGAGAAAGACGATGATGCTGATGCTGATGATGATGATGATGATGGAAAAATGGTGGTCGTGGGTGCGTTAAGAGGACACACAAACTCTATACTATGTTTGGCTGTTGTTTGGGATTTGTTGTGTAGTGGTTCAGCAGACAAAACCATAAGAATTTGGAGAGGTGTTGGTAGAGATTATTGTTGTTTGTCTGTTTTAGAAGGACATCAAGGTTCAATTAAGTGCTTAACTGCAGTGGTTGAAAACTGTGATGATAATTCAGAATCAGAAGAAGCGTCTTTTTTAGTTTATAGTAGTAGTTTGGACTGTGACATTAAGGTTTGGCAGATTTTTGTTCCTGCTATGTAA 1251 0.4133 MKIMDYHYDTPSSSSHSNHSLQLAGSTSLSSQRSLLSVPSLNSHNLNHLHTSHLITTLKSHNTSSYTSSLTLFGKFLLTGSSDREITTWNITTSDEQNSTNKVVAGKGAVKSLVIQSNIHTNTNTLFSAHQDHKIRVWKLTNDQKYTHLATLPTLGDRASKILIPKNHVQIRRHKKCTWVHHVDTVSSLALSKDGTLLYSVSWDRTIKIWRTKDFTCLESITNAHDDAINAVVVSYDGVVYSGSADKRIKVWKNLQHDEKHKQKHCLVDTLEKHNSGINALVLSSDESVLYSGACDRSILVWEKDDDADADDDDDDGKMVVVGALRGHTNSILCLAVVWDLLCSGSADKTIRIWRGVGRDYCCLSVLEGHQGSIKCLTAVVENCDDNSESEEASFLVYSSSLDCDIKVWQIFVPAM 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03864 416 SUPERFAMILY WD40 repeat-like 50 411 IPR036322 GO:0005515
Vivi3g03864 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Vivi3g03864 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 303 IPR001680 GO:0005515
Vivi3g03864 416 Pfam WD domain, G-beta repeat 180 210 IPR001680 GO:0005515
Vivi3g03864 416 Pfam WD domain, G-beta repeat 217 253 IPR001680 GO:0005515
Vivi3g03864 416 Pfam WD domain, G-beta repeat 323 354 IPR001680 GO:0005515
Vivi3g03864 416 Pfam WD domain, G-beta repeat 268 302 IPR001680 GO:0005515
Vivi3g03864 416 Pfam WD domain, G-beta repeat 362 409 IPR001680 GO:0005515
Vivi3g03864 416 SMART WD40_4 360 410 IPR001680 GO:0005515
Vivi3g03864 416 SMART WD40_4 318 355 IPR001680 GO:0005515
Vivi3g03864 416 SMART WD40_4 96 139 IPR001680 GO:0005515
Vivi3g03864 416 SMART WD40_4 214 253 IPR001680 GO:0005515
Vivi3g03864 416 SMART WD40_4 172 211 IPR001680 GO:0005515
Vivi3g03864 416 SMART WD40_4 264 303 IPR001680 GO:0005515
Vivi3g03864 416 SMART WD40_4 51 90 IPR001680 GO:0005515
Vivi3g03864 416 FunFam BnaA09g28200D protein 169 257 - -
Vivi3g03864 416 MobiDBLite consensus disorder prediction 1 24 - -
Vivi3g03864 416 Gene3D - 15 161 IPR015943 GO:0005515
Vivi3g03864 416 ProSitePatterns Trp-Asp (WD) repeats signature. 77 91 IPR019775 -
Vivi3g03864 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 354 IPR001680 GO:0005515
Vivi3g03864 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 210 - -
Vivi3g03864 416 Gene3D - 166 413 IPR015943 GO:0005515
Vivi3g03864 416 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 14 411 IPR045182 -
Vivi3g03864 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Vivi3g03864 416 CDD WD40 54 410 - -
Vivi3g03864 416 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Vivi3g03864 416 PRINTS G protein beta WD-40 repeat signature 77 91 IPR020472 -
Vivi3g03864 416 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Vivi3g03864 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 354 - -
Vivi3g03864 416 MobiDBLite consensus disorder prediction 8 24 - -
Vivi3g03864 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Vivi3g03864 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 253 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03864 Vivi-Chr3 66556883 66558516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03864 122 410 Acyl Lipid Metabolism Gene Families AT3G18860 26.962 4.23e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03864 - - gmx:100777242 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02083 1 44099168 44100814 Vivi3g03864 3 66556883 66558516 ECH
Vivi3g03864 3 66556883 66558516 Vivi3g03864 3 66556883 66558516 ECH
Vivi1g02083 1 44099168 44100814 Vivi3g03864 3 66556883 66558516 PCT