Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02083 ATGGAATATCAAATATCCTTCAGCAGTGACTCTAATAACCTCCAAAAAGAGTTTGCTACTACACGTAGTTTTTCTTCACAACACAGTCTAGCATCAGTTCCTTCTTTGAACTCGAACTCAAACTCAAACTCACAATTTCTTAACTCTTCCTTCACATGCATCACAACTCTCAAACTCCATACTTACATATCCTCTTTAACCCTTGCAGGAAACTTCCTCTACACTGGTTCATCCAGCAAAGAAATCACATCATGGAATATAACTCATTTTCATTCTCACCCTCAAGAATCAATTAACACAATAGTTTCTGGAAACGGTGCTGTGAAATCAATAGTAATCCATTCAGACAGGCTTTTCACAGCTCATCAAGACAACAAAATCCGCATTTGGAAAATCACAATTACCAACGACGGCGAACTTCAACAACAACACAAGTTCACCCGCTTAGCCACGCTCCCTACATTCACTAACCGTTTCACATCAATCTTGAATCCCAAGAACCATGTTAAGATCCGATTCCGAAGGCACAAAAAATGCACATGGATACACCATGTTGATACAGTCTCTTCCCTTGCCTTATCCAAAGACGGAACCTTGTTGTACTCAGTTTCATGGGACAGAACAATCAAGGTTTGGAAAACCAAAGACTTGACATGTTTGGAATCAGTGCAAACTGCACACGACGATGCAATAAACGCGATCACAGTATCTAACGATGGATATGTTTACACTGGATCAGCAGATAAAAAAATTAAGGTTTGGAAGAAAGAAAAAGGCGATAAGAACCACTCGTTGATAGATACATTAGAGAAACACAGGTCTGGTGTTAATGCATTGGCCCTTAACAGTGACGGTTCAGTTTTATATTCTGGTGCATGTGATAGATCAATATTGGTATATAAGAGAGGTGAAAATGGTAATTTGGTAGTGATGGGTGCGCTTCGTGGTCACACAAAGTCTATATTGTGTTTGGCAGTAGTTTCTGATTTGGTTTGCAGTGGTTCTGAGGATAAGACAATACGAATATGGAGAAGCAATAGTAATAATGTTGATAGAGAGTATTGTTGTTTGGGTGTTTTAGAAGGACATAGAGGTCCAATTAAGTGCCTAATTGCTGTCTTTGATCAGTTTGATGAACAATCATCGGAAGCGACTTTCCTTATCTATAGTGGCAGTTTGGACTGTGATGTTAAGGTTTGGAAGATGTTTCTTCCTCTTCTATGA 1224 0.3905 MEYQISFSSDSNNLQKEFATTRSFSSQHSLASVPSLNSNSNSNSQFLNSSFTCITTLKLHTYISSLTLAGNFLYTGSSSKEITSWNITHFHSHPQESINTIVSGNGAVKSIVIHSDRLFTAHQDNKIRIWKITITNDGELQQQHKFTRLATLPTFTNRFTSILNPKNHVKIRFRRHKKCTWIHHVDTVSSLALSKDGTLLYSVSWDRTIKVWKTKDLTCLESVQTAHDDAINAITVSNDGYVYTGSADKKIKVWKKEKGDKNHSLIDTLEKHRSGVNALALNSDGSVLYSGACDRSILVYKRGENGNLVVMGALRGHTKSILCLAVVSDLVCSGSEDKTIRIWRSNSNNVDREYCCLGVLEGHRGPIKCLIAVFDQFDEQSSEATFLIYSGSLDCDVKVWKMFLPLL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02083 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 343 - -
Vivi1g02083 407 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Vivi1g02083 407 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Vivi1g02083 407 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Vivi1g02083 407 SMART WD40_4 174 213 IPR001680 GO:0005515
Vivi1g02083 407 SMART WD40_4 307 344 IPR001680 GO:0005515
Vivi1g02083 407 SMART WD40_4 94 131 IPR001680 GO:0005515
Vivi1g02083 407 SMART WD40_4 50 86 IPR001680 GO:0005515
Vivi1g02083 407 SMART WD40_4 216 255 IPR001680 GO:0005515
Vivi1g02083 407 SMART WD40_4 353 401 IPR001680 GO:0005515
Vivi1g02083 407 SMART WD40_4 262 301 IPR001680 GO:0005515
Vivi1g02083 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Vivi1g02083 407 Gene3D - 170 404 IPR015943 GO:0005515
Vivi1g02083 407 Gene3D - 37 169 IPR015943 GO:0005515
Vivi1g02083 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 213 - -
Vivi1g02083 407 SUPERFAMILY WD40 repeat-like 67 402 IPR036322 GO:0005515
Vivi1g02083 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 264 IPR001680 GO:0005515
Vivi1g02083 407 Pfam WD domain, G-beta repeat 181 213 IPR001680 GO:0005515
Vivi1g02083 407 Pfam WD domain, G-beta repeat 355 401 IPR001680 GO:0005515
Vivi1g02083 407 Pfam WD domain, G-beta repeat 266 300 IPR001680 GO:0005515
Vivi1g02083 407 Pfam WD domain, G-beta repeat 225 255 IPR001680 GO:0005515
Vivi1g02083 407 Pfam WD domain, G-beta repeat 312 343 IPR001680 GO:0005515
Vivi1g02083 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 353 IPR001680 GO:0005515
Vivi1g02083 407 FunFam BnaA09g28200D protein 171 259 - -
Vivi1g02083 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 255 - -
Vivi1g02083 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 301 IPR001680 GO:0005515
Vivi1g02083 407 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 401 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02083 Vivi-Chr1 44099168 44100814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02083 174 402 Miscellaneous Gene Families AT5G08390 24.034 4.40e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02083 - - gmx:100801906 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02083 1 44099168 44100814 Vivi3g03864 3 66556883 66558516 ECH
Vivi1g02083 1 44099168 44100814 Vivi1g02083 1 44099168 44100814 ECH
Vivi1g02083 1 44099168 44100814 Vivi3g03864 3 66556883 66558516 PCT