Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02992 ATGGCTAATAACGCAGCTTCGTGTGCTGAGAGAGCAACCAGCGACTTGCTCATTGGTCCGGATTGGGCTATCAACATAGAATTGTGTGATATCATTAATATGGACCCAAGGCAAGCAAAGGATGCATTGAAGATACTTAAGAAGCGCTTGGGCAGTAAAAATCCCAAAACACAGCTGCTGGCTCTTTTTGTACTGGAGACCCTTACTAAAAATTGTGGTGAAAGTGTATTTCAGCAGATCATTGAGCGTGATATATTGCACGAAATGGTTAAGATAGTGAAGAAAAAGCCGGATTTAAGTGTGAGAGAAAAGATACTGATTTTAATTGATGCATGGCAAGAAGCTTTTGGAGGCCCAAGTGGAGTTTTCCCCCAATACTATGCAGCATATAACGAACTAAAGGCTGCTGGAGTTGAATTTCCACCAAGAGAAGAAAATAGTGTGCCATTCTTCACACCTCCTCAAACTCAGCCAATTATTCATTCTGCTGCAGAATTTGATGATGCTGCTATTCAGGCTTCTCTTCAATCAGATGCATCTGACCTTAGTGTACTAGAGATTAAAAATGCTCAAGGGCTGGCTGATGTTTTGACGGAAATGCTCAGTGCCTTGAATCCGAAAGACCCCGAGGGCCTGAAGGATGAAGTGATTGTTGATCTTGTTGACCAGTGTCGTTCTTACCAGAAACGGGTCATGCTTCTTGTGAGCAATACACTGGATGAGGAGCTTTTAGGTCTGGGATTAGCACTGAATGACAGCCTTCAGCGAGTACTCAGTCAACATGACAATATTGCAAAAGGAACTGCTAATTCAGGTGCAAGAGAAGTTGAAACTCCAGTTCTGCCGCTTGTAAATGTAAACCATGAAGATGATGACTCAGAAGATGATTTTGGTCAATTAGCCCATAGGTCTTCACGAGATACTCATGCACAGAATCGGAAACCAGAGTCAGTGAGGACGACCTCACTTATTCCCCCACCACCAGCATCAAAGAGGCCAGTCTATTCTGGTACTGGCATGGTTGACTATCTTAGTGGTGATACATACAAGGCAGAAGGATCCCTTGAAAACTCAGAACCAACTTCATATGCAGCTCCTCATCATTCTAGCCCTAATCCTACCTCATCAACTATTCCAACAGAGTCTTCACCCCATCCTCATTCGACTACTACCTCATCACCAATTTTTAGCCAACAGCCTATATACGACGAGCCATCTCCCATGAAGTCTTCAGAACAGTTGCCTCCAGCTCCCTGGGATACACAAGCTCCTGTTGTCATTCCACCCCCACCTTCAAAGTATAATCAGAGACAACAGTTTTTTGAGCAAAAAGGTTCATCTCATTCGAGCAATGGATCAAGTTCGTCTACTGACAGCTTGGTGGGACAAACACAAAATCTCTCTCTGAATCCGTCCACCCCAACCAAAGAACAGAAGCCAGAAGATGCACTTTTCAAAGATCTTGTTGATTTTGCAAAATCAAAAACCTCTTCATCTTCTAAACCCAATAGGTTATATTGA 1521 0.432 MANNAASCAERATSDLLIGPDWAINIELCDIINMDPRQAKDALKILKKRLGSKNPKTQLLALFVLETLTKNCGESVFQQIIERDILHEMVKIVKKKPDLSVREKILILIDAWQEAFGGPSGVFPQYYAAYNELKAAGVEFPPREENSVPFFTPPQTQPIIHSAAEFDDAAIQASLQSDASDLSVLEIKNAQGLADVLTEMLSALNPKDPEGLKDEVIVDLVDQCRSYQKRVMLLVSNTLDEELLGLGLALNDSLQRVLSQHDNIAKGTANSGAREVETPVLPLVNVNHEDDDSEDDFGQLAHRSSRDTHAQNRKPESVRTTSLIPPPPASKRPVYSGTGMVDYLSGDTYKAEGSLENSEPTSYAAPHHSSPNPTSSTIPTESSPHPHSTTTSSPIFSQQPIYDEPSPMKSSEQLPPAPWDTQAPVVIPPPPSKYNQRQQFFEQKGSSHSSNGSSSSTDSLVGQTQNLSLNPSTPTKEQKPEDALFKDLVDFAKSKTSSSSKPNRLY 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02992 506 Pfam GAT domain 193 267 IPR004152 GO:0035091|GO:0043130
Vivi3g02992 506 FunFam TOM1-like protein 2 4 151 - -
Vivi3g02992 506 Gene3D - 2 158 IPR008942 -
Vivi3g02992 506 Gene3D - 175 273 IPR038425 -
Vivi3g02992 506 ProSiteProfiles GAT domain profile. 177 266 IPR004152 GO:0035091|GO:0043130
Vivi3g02992 506 PANTHER TOM1-LIKE PROTEIN 2 500 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vivi3g02992 506 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Vivi3g02992 506 PIRSF TOM1 1 506 IPR014645 -
Vivi3g02992 506 Pfam VHS domain 9 116 IPR002014 GO:0035091|GO:0043130
Vivi3g02992 506 MobiDBLite consensus disorder prediction 351 406 - -
Vivi3g02992 506 CDD VHS 10 135 - -
Vivi3g02992 506 MobiDBLite consensus disorder prediction 432 477 - -
Vivi3g02992 506 MobiDBLite consensus disorder prediction 351 484 - -
Vivi3g02992 506 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Vivi3g02992 506 SUPERFAMILY ENTH/VHS domain 8 142 IPR008942 -
Vivi3g02992 506 SUPERFAMILY GAT-like domain 145 267 - -
Vivi3g02992 506 MobiDBLite consensus disorder prediction 295 314 - -
Vivi3g02992 506 MobiDBLite consensus disorder prediction 287 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02992 Vivi-Chr3 49911539 49917423 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02992 - - gmx:100792343 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04765 4 176885511 176893553 Vivi3g02992 3 49911539 49917423 PCT