Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01274 ATGGATATTGAGTGTGGAATTCCAATTTTAGATTTTCGTAAGAGTACTGGAGTGACACTAGAAGAAGGAAGTCATGGATGGAAAGAAATGAGTAAGAAAGTGAGAGAAGCATTTGAAAGTCACGGTGCTTTTCTCTTAAGATGTGATGAAATACCACATGAATTACGTAAAGAAATGTTTACGGGTATGAAATCTTTGTTTGACCTACCCGAGGAGACAAAGCTGAAGTACACTGGCACAGGGAATTTTAGAGGCTACAACAAACTTCCTGGCCTTCCCCATAGTCACAGTTTTAGTATTGATGATGCTTTTCAGTCAGATACAACTAAAAAATTCACTAATCTCATGTGGTCAGAAGGAAATCCATCTTTCAGCGAGGCACTTATTTCTTTTTCCTCAAAAGCACGAGAACTTAACTCGCTTATTCTTAAAATGGCTGTGGAGGGCTTTGGCCTTCCTGAAAAATACATTTTAGAAGTTGAAGAGTTGAATAGCAATGCTAATTCACGAATGACAAAGTATCAACTTCCCGAAGAAAATGAAGGTTTTGCTATTACTTGTGTGCCTCACACAGACAAAGGTACCATAACCTTTTTATGCGAGGATGAAGTTCCAGGTCTGCAGGTATTACAAAAATCGGGCAATTGGGCTGATGTAAAATTTCCTCCAAATGGTTTTATTGTAATTGTTGGTGACATGTTGCAGGCATGGAGCAATGGGAGATTCAAAGCACCAATGCATAGAGTGGTGTTAAGAGGAAACAAAGAGAGATTTGTATTTATTCTTTTTTCAGTGCCAAAGAAAGAGACCATCGTTAAGGCACCCTCTGAGTTGATTGATGAAGAAGATCACCCTTCCCTTTACAAGTCATTCCCTTTTCAAGAGTTTATGGATTTTCTTAAGATATATGGCACTAAAGAGGGAGAACTCAAAGCATTTGCTGGACTTTAA 951 0.3838 MDIECGIPILDFRKSTGVTLEEGSHGWKEMSKKVREAFESHGAFLLRCDEIPHELRKEMFTGMKSLFDLPEETKLKYTGTGNFRGYNKLPGLPHSHSFSIDDAFQSDTTKKFTNLMWSEGNPSFSEALISFSSKARELNSLILKMAVEGFGLPEKYILEVEELNSNANSRMTKYQLPEENEGFAITCVPHTDKGTITFLCEDEVPGLQVLQKSGNWADVKFPPNGFIVIVGDMLQAWSNGRFKAPMHRVVLRGNKERFVFILFSVPKKETIVKAPSELIDEEDHPSLYKSFPFQEFMDFLKIYGTKEGELKAFAGL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01274 316 Gene3D - 2 301 IPR027443 -
Vivi3g01274 316 Pfam 2OG-Fe(II) oxygenase superfamily 174 263 IPR044861 -
Vivi3g01274 316 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 166 266 IPR005123 -
Vivi3g01274 316 SUPERFAMILY Clavaminate synthase-like 6 299 - -
Vivi3g01274 316 FunFam 2-oxoglutarate-dependent dioxygenase DAO 5 313 - -
Vivi3g01274 316 Pfam non-haem dioxygenase in morphine synthesis N-terminal 7 89 IPR026992 -
Vivi3g01274 316 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 7 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01274 Vivi-Chr3 21165893 21167109 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01274 7 296 Glycosyltransferase AT5G59530 25.246 1.42e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01274 - - tpra:123920789 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01271 3 21133609 21134751 Vivi3g01274 3 21165893 21167109 PCT