Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01169 ATGACGGATGACAAAGCAGTTGAGGAAGTTGAAAAGAAAGAGAAAAGTCCTACTGCTGCTGCTGGGAATGAAAAGAAAAAGGGAAAAGGATTCTTTTCTCGAATTTGGACTGGATTCTTTAGGTTTTTTAGGTTACACGGCGATGATTTTGAGAAACGCCTTCAGCATATTTCTAAAGAGGAAGCTTCTATTATTGCTAAAGTCGCCAGGAGATCGCGATCAAGGAGGCGCGTGTCCCGCAATCTCATTGTATTTTCTATTATATTTGAGGTCATTGCTGTAGGTTATGCTATTATGACAACACGATCTGTGGGTATCGATTGGAAAATGAGGGCAATCCGGGTTTTACCAATGTTTCTTTTGCCTGCACTATCAACTGCTGCTTATTCAGCATTTATCAGCTTCACAAGAATGTGTGATCAAAGGGACCAAAATGTTCTTGAAAAGCTTCGAGCTGAAAGGCAAGCAAAAATTGACGAGCTCAAAGAAAAAACAAACTATTACTCCACACAACAGCTTATTCAGAGATATGATCCAGACCCAGCCGCAAAGGCAGCTGCTGCAACTGTTTTGGCGTCTAAATTGGGTGCAGATTCTGGTTTGCAATGGTACATGGGTGAGGACTCCAATCGCAGCGGTGCTTCAACAGGGAAAAGCAATGATGTTGAACTTGTGCAGTCCTCTGGACTTCGAAATCGGAAACAAGCTCAAACTAGATCCACTGGTACAGGGACAACCTCACCAAATTTTGCTGATCAACAATTAGTAGGTTCAGGTTCAGGTGGATTCGATCAAACCCCGGGGTCTGAGTATAATCAACATGTTGTTGTTGAACATCAACCTCAAAGTTCAAACCCACAAGATGCAGGATGGATTGCAAGAATTGCAGCGTTGCTTGTGGGTGAGGATCCAACTCAATCTTATGCTCTCATATGCGGCAACTGCCACATGCATAACGGTCTTGCTCGAAAGGAGGATTTCCCATTTATCACTTATTACTGCCCGCATTGCCAAGCGCTGAACAAACCAAAGCAATTGGACGGTGTCTCCGGCCTTCCTTCCCCTAATTCGAGGTCTGTGCAAATGGAAGAACGTATATTGGCTCTTCCTTCCCCTAATGCGGACGGTTCTGTGCAATTGGACGGACATATCTCTGGCCTTCCTTCCCCTAATGCGGGGTCTGTGCAATTGGATGAACACGCCTCGGGCCTTCCTTCTCCCCAAACAGGCGACAGTGACGCAGTTTTAAATGCTAGTGCTTCTGCTACAGAGAGCACAATCACAGGCAATAGTCCCGTAAACGGCAGCCCTGAGATTGAGGAAGTATCAGAAAGGACAAGTTTAGAGGAGAAAACTGATTGA 1362 0.4493 MTDDKAVEEVEKKEKSPTAAAGNEKKKGKGFFSRIWTGFFRFFRLHGDDFEKRLQHISKEEASIIAKVARRSRSRRRVSRNLIVFSIIFEVIAVGYAIMTTRSVGIDWKMRAIRVLPMFLLPALSTAAYSAFISFTRMCDQRDQNVLEKLRAERQAKIDELKEKTNYYSTQQLIQRYDPDPAAKAAAATVLASKLGADSGLQWYMGEDSNRSGASTGKSNDVELVQSSGLRNRKQAQTRSTGTGTTSPNFADQQLVGSGSGGFDQTPGSEYNQHVVVEHQPQSSNPQDAGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPFITYYCPHCQALNKPKQLDGVSGLPSPNSRSVQMEERILALPSPNADGSVQLDGHISGLPSPNAGSVQLDEHASGLPSPQTGDSDAVLNASASATESTITGNSPVNGSPEIEEVSERTSLEEKTD 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01169 453 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 25 450 IPR040115 GO:0071786
Vivi3g01169 453 MobiDBLite consensus disorder prediction 372 453 - -
Vivi3g01169 453 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 291 341 IPR019273 -
Vivi3g01169 453 Coils Coil 144 167 - -
Vivi3g01169 453 MobiDBLite consensus disorder prediction 389 441 - -
Vivi3g01169 453 MobiDBLite consensus disorder prediction 1 25 - -
Vivi3g01169 453 MobiDBLite consensus disorder prediction 226 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01169 Vivi-Chr3 19568754 19572556 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01169 K23292 - gmx:100797087 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05005 4 180409934 180419427 Vivi3g01169 3 19568754 19572556 PCT