Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g08014 ATGAACGGTGGCGATGACGTTGTCGCAGCTCCGGCGGGTCCACCGTCTCCTTTGGAGTGGAAATTCTCTCAGGTGTTTGGTGAACGTACGGCGGGTGAAGAGGTTCAGGAAGTGGACATAATTTCTGCTATCGAATTTGACAAGTCTGGCGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTGGTTCTCTTTGAGAGGACGGATACAAAAGATCATGGTGAATCTAGAAGGGATTCAGAAAGGATGGATTATTCGATCAGCAGGCATCCTGAATTCCGTTACAAAACAGAGTTTCAGAGTCACGAGCCCGAGTTTGACTACCTTAAGAGTTTGGAGATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAATAGCTAATGGCGCCCTTTTCCTTCTCTCGACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTGCTGAGATGAATGTTGACCCTTCTTTGAAAACAATGGGAAATGGCAGTATTGCTAGTTCAAGTAATTTAAGTAATCCTAAGCCAAGCCTTGAAAATGGAGGATATCCTGATTCAGATAGATCATTCAACTATCTTAGCTCTGACTTCTCATTTCCTCCGGGAGGCATACCGTCACTAAGATTACCCGTGGTAGTAAGTAGTCATGAAACAAGCTTGGTGGCTCGATGCCGTAGAGTTTATGCCCATGCACACGATTATCATATCAATTCTATTTCAAATAACAGTGATGGCGAAACTTTCATATCAGCTGATGATTTGAGAATAAATCTTTGGAACCTGGAAATAAGCAGTCAAAGTTTTAATATCGTTGATGTAAAACCTGCAAACATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTCCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTAATTGACTTGCGGCAGTCAGCGTTATGTGATTCTCATGCCAAACTGTTCGAGGAACAGGAGGCTCCAGGATCCAGATCATTTTTCACCGAGATCATTGCTTCTATATCTGACATAAAATTTGGGAAGGATGGAAGATACATACTCAGTCGTGATTACATGACTTTAAAGTTATGGGACATTAATATGGATTCAGGTCCTGTTGCTACTTACCAGGTTCATGAGTATCTAAGACCTAAGCTTTGTGATTTATATGAAAACGATTCGATTTTTGATAAGTTCGAGTGCTGTCTGAGCGGCGATGGACTACGAGTAGCAACTGGTTCTTACAGCAATTTATTCCGAGTATTCGGCTGTTCTCCTGGAAGTACCGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACAAGTTCCGACTCCTTCAAGGCCGTCTAGATCACTTGGAAATAGTCTAACACGAGTTGTAAGACGGGGAGCAGAAAACCCCGGTGTTGATGCAAACGGGAATTCGTTTGATTTCACAACAAAGCTGTTGCACTTAGCATGGCATCCATCTGAAAATTCAATTGCCTGTGCTGCAGCAAATAGCTTGTACATGTACTATGCATAA 1557 0.42 MNGGDDVVAAPAGPPSPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGESRRDSERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTNDKTIKFWKVQEKKVKKIAEMNVDPSLKTMGNGSIASSSNLSNPKPSLENGGYPDSDRSFNYLSSDFSFPPGGIPSLRLPVVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATYQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCSPGSTEATTLEASKNPMRQVPTPSRPSRSLGNSLTRVVRRGAENPGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g08014 518 PIRSF PPA2_B55 12 518 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Vivi2g08014 518 MobiDBLite consensus disorder prediction 445 465 - -
Vivi2g08014 518 SMART WD40_4 105 145 IPR001680 GO:0005515
Vivi2g08014 518 SMART WD40_4 277 317 IPR001680 GO:0005515
Vivi2g08014 518 SMART WD40_4 31 66 IPR001680 GO:0005515
Vivi2g08014 518 SMART WD40_4 336 374 IPR001680 GO:0005515
Vivi2g08014 518 SMART WD40_4 227 266 IPR001680 GO:0005515
Vivi2g08014 518 Gene3D - 67 516 IPR015943 GO:0005515
Vivi2g08014 518 MobiDBLite consensus disorder prediction 165 186 - -
Vivi2g08014 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 323 350 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 379 404 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 238 265 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 266 293 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 405 431 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 294 322 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 351 378 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 487 516 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 200 - -
Vivi2g08014 518 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 518 IPR000009 GO:0000159|GO:0019888
Vivi2g08014 518 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Vivi2g08014 518 MobiDBLite consensus disorder prediction 165 185 - -
Vivi2g08014 518 SUPERFAMILY WD40 repeat-like 39 509 IPR036322 GO:0005515
Vivi2g08014 518 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 212 514 - -
Vivi2g08014 518 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 236 250 IPR018067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g08014 Vivi-Chr2 230208138 230215020 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g08014 K04354 - gmx:100799449 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03737 7 103284029 103289731 Vivi2g08014 2 230208138 230215020 ECH
Vivi2g08014 2 230208138 230215020 Vivi2g08014 2 230208138 230215020 ECH
Vivi2g08014 2 230208138 230215020 Vivi7g03737 7 103284029 103289731 PCT