Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07039 ATGGCTTCGGAGGTTATAGTTAGAGACGAGGGAGTTAGAGAGATACAGAGATACTCGGAGAATAACGTGTATAGGAGAAAAGCGTTCAAAAGTTCGAAGAATAAAGTTAACAACGCCTTGAGCGATGTTCCTCGTGCTAGTTCTTCATCTGCTGCTACCACAACTGTCACTGCTGATGGAACGAAGGAGAATGGAAACAATAACAATGTTTCTGTTCAGCAGCCGGATCGGGTTACGGCTCCCGAGAATGGGAATTCGCCTCGTCCTGTAGTGAATTCTAGGTTGGATGTGGTTTCTGAAGACTCGTCTAGTTTGAATCTTCCGCAGGAGGAACATTTTACTCTTGATGTTCAGCTGGAAGATGCTCCTGGTTCGCTAGAACCATCTTTGAGGAACTGTGATAATAAGCAGGGGGTGGAGAATGGTGTTAGCAATGGCCTGACTTCGCGGTCGAAGCAGGAGACACGGGAGCTTAGGAGGAGGCTTGAGAGCGAGCTTGAAACAGTGAGATCTTTGGTGAATAGGATTGAAGAGAAGCAAGGGATGGTTGGGATGTATGGTGGTAATTTGAATATGTCGGTGGATTATCATATGGTTAATAATGGCGGTGGAGCTAAGCGCACTCACTCTGAGGTAGTATCTGCAGGTGTTCCGAGAGAGCCTACTAGGCCTTTACGTCAGTTAAGTGTAATGGTGTTAGAGAATAGTCAAGGGGTTAGTGAAATTATTGAAAGGGAGAAGAGAACACCCAAGGCAAACCAGTTCTATTGCAATTCAGAATTCTTGCTTGCAAAAGATAAGTTCCCGCCTGCAGAGAGTAACAAGAAGTCAAGATTGAATGGAAAGAAGCATGGCAGGGGAGAAATGGGACACGGGCTTGGGGTAGTAGCGAAATATTTGAAGAGCTGTAGCTCATTGCTTGAAAAGTTGATGAAGCACAAGCACGGTTGGGTGTTTAATAAACCAGTTGATGTTGAAGGTCTTGGTTTGCATGATTATTTTATAATCATCTCTCATCCAATGGACTTGGGTACTGTGAAGTCGAGGCTGAACAAGAATTGGTACAAATCACCCAAGGAGTTTGCGGAGGATGTGAGACTTACTTTTCGTAATGCCATGACATATAATCCTAAAGGCCAAGATGCTCATATAATGGCGGAGGAGCTATTAACATTGTTTGACGAAAGGTGGGCTATTATAGAGGCAAATTACAATCATGAAATGAGGTATGTCATGGACTACGGGCCAGCTGTTTCTGCACCTTCACCTCTGTCTAGAAAGACTCCTGCTTTCCGGCCTCCACCTCTAGACATGAGAAGGATTCTGGATAGGTCAGAATCAATGACAAAACCTCCAAAACCCACGAACTTTACTCGTTCAGCTCGAACTCCTGCTCCCAAAAAGCCTAAAGCTAACGATCTTCACAAAAGAGACATGACATTTGAAGAGAAGCAAAAACTTAGCACACATCTTCAGAATCTACCTTCTGATAAACTAGATGCTATTGTACAGATCATGAAGAAACAAAATTCAGCACTTTCCCAACATGATGATGAAATTGAAGTGGACATTGATAGTGTGGATGCAGAGACTCTTTGGGAGCTTGATAGATTTGTTACCAACTATAAGAAAAGTTTGAGCAAATACAAGAGGAAGGCTGAACTTGCAATTCAAGCTAGAGCAGAAGCTGAGCAAATGGCCCAGCAGAGGAGCCAAGCACAAGACGACGTTGTTGAGGTACCTAGAGAAAGACAAGCAGAGGAAAGAAATGCTCCCCCATCCTTGCCCGTCCAAGGGGAAATTCAAGTGGATAATCGGAGTAACACAAGTAGCTCAAGCAGCTCAAGCAGTGATTCTGGCTCTTCATCAAGTGATTCTGATAGTGACAGCTCCTCGGCGTCTGGGTCTGATGCAAGGTCACCGTGA 1926 0.4439 MASEVIVRDEGVREIQRYSENNVYRRKAFKSSKNKVNNALSDVPRASSSSAATTTVTADGTKENGNNNNVSVQQPDRVTAPENGNSPRPVVNSRLDVVSEDSSSLNLPQEEHFTLDVQLEDAPGSLEPSLRNCDNKQGVENGVSNGLTSRSKQETRELRRRLESELETVRSLVNRIEEKQGMVGMYGGNLNMSVDYHMVNNGGGAKRTHSEVVSAGVPREPTRPLRQLSVMVLENSQGVSEIIEREKRTPKANQFYCNSEFLLAKDKFPPAESNKKSRLNGKKHGRGEMGHGLGVVAKYLKSCSSLLEKLMKHKHGWVFNKPVDVEGLGLHDYFIIISHPMDLGTVKSRLNKNWYKSPKEFAEDVRLTFRNAMTYNPKGQDAHIMAEELLTLFDERWAIIEANYNHEMRYVMDYGPAVSAPSPLSRKTPAFRPPPLDMRRILDRSESMTKPPKPTNFTRSARTPAPKKPKANDLHKRDMTFEEKQKLSTHLQNLPSDKLDAIVQIMKKQNSALSQHDDEIEVDIDSVDAETLWELDRFVTNYKKSLSKYKRKAELAIQARAEAEQMAQQRSQAQDDVVEVPRERQAEERNAPPSLPVQGEIQVDNRSNTSSSSSSSSDSGSSSSDSDSDSSSASGSDARSP 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07039 641 MobiDBLite consensus disorder prediction 33 91 - -
Vivi2g07039 641 MobiDBLite consensus disorder prediction 30 91 - -
Vivi2g07039 641 PANTHER OSJNBA0053K19.4 PROTEIN 137 636 - -
Vivi2g07039 641 MobiDBLite consensus disorder prediction 129 157 - -
Vivi2g07039 641 Pfam Bromodomain 303 387 IPR001487 GO:0005515
Vivi2g07039 641 Coils Coil 152 179 - -
Vivi2g07039 641 PRINTS Bromodomain signature 364 383 IPR001487 GO:0005515
Vivi2g07039 641 PRINTS Bromodomain signature 330 346 IPR001487 GO:0005515
Vivi2g07039 641 PRINTS Bromodomain signature 346 364 IPR001487 GO:0005515
Vivi2g07039 641 PRINTS Bromodomain signature 314 327 IPR001487 GO:0005515
Vivi2g07039 641 ProSiteProfiles Bromodomain profile. 311 383 IPR001487 GO:0005515
Vivi2g07039 641 MobiDBLite consensus disorder prediction 130 151 - -
Vivi2g07039 641 MobiDBLite consensus disorder prediction 600 641 - -
Vivi2g07039 641 ProSiteProfiles NET domain profile. 469 550 IPR027353 -
Vivi2g07039 641 MobiDBLite consensus disorder prediction 566 641 - -
Vivi2g07039 641 MobiDBLite consensus disorder prediction 445 472 - -
Vivi2g07039 641 SUPERFAMILY Bromodomain 294 405 IPR036427 GO:0005515
Vivi2g07039 641 Pfam Bromodomain extra-terminal - transcription regulation 479 540 IPR027353 -
Vivi2g07039 641 Coils Coil 546 576 - -
Vivi2g07039 641 Gene3D - 289 412 IPR036427 GO:0005515
Vivi2g07039 641 Gene3D - 472 549 IPR038336 -
Vivi2g07039 641 CDD Bromo_plant1 300 397 IPR037377 -
Vivi2g07039 641 SMART bromo_6 292 402 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07039 Vivi-Chr2 212385890 212391693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07039 - - mtr:25487764 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07039 2 212385890 212391693 Vivi2g07039 2 212385890 212391693 ECH
Vivi2g07039 2 212385890 212391693 Vivi5g03383 5 125234823 125240651 PCT