Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04279 ATGTCTCCTTCAATTTCTCTCTCTGCTATATTTCTCATCCTCCTCCTCCTTCAATCTCCTCTCCCATCTCTCTCAACAAACTCCGAAGGAAACGCTTTACACGCTTTGAGAACCAGGCTTTCTGATCCCAACAACGTTCTTCAAAGCTGGGACCCAACTCTTGTTAACTCATGCACTTGGTTCCATGTTACCTGCGACTCCAACAACCACGTTATTCGCCTAGACTTGGGTAATTCTAACATCTCTGGTTCTTTGGGACCTGAACTAGCTCAATTAACTCATCTTCAATACTTGGAGTTATATAATAATAATATTAATGGAAAAATTCCTGAGGAACTTGGTAATTTGAAGAATCTGATAAGTATGGATTTGTATAATAATAAATTTGAAGGGAATATCCCAAAGTCATTTAGCAACTTGAAGGCAATTAAATTCCTGAGGTTAAACAACAATAAGCTCACAGGACCTATCCCAAGAGAACTTACTCATCTTAAAAATCTCAAAATTCTTGATGTTTCTAATAATAACCTCTGTGGAACAATACCAGTAGATGGCAACTTTGGATCTTTCCCAGCAGAAAGTTTTGAAAATAACGCACTCAACGGCCCAGAACTGAAAGGACTGGTTCCTTATGACTTTGGATGCTAA 648 0.3843 MSPSISLSAIFLILLLLQSPLPSLSTNSEGNALHALRTRLSDPNNVLQSWDPTLVNSCTWFHVTCDSNNHVIRLDLGNSNISGSLGPELAQLTHLQYLELYNNNINGKIPEELGNLKNLISMDLYNNKFEGNIPKSFSNLKAIKFLRLNNNKLTGPIPRELTHLKNLKILDVSNNNLCGTIPVDGNFGSFPAESFENNALNGPELKGLVPYDFGC 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04279 215 FunFam Somatic embryogenesis receptor kinase 1 25 210 - -
Vivi2g04279 215 Pfam Leucine rich repeat 122 177 IPR001611 GO:0005515
Vivi2g04279 215 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 190 - -
Vivi2g04279 215 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Vivi2g04279 215 SUPERFAMILY L domain-like 26 202 - -
Vivi2g04279 215 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515
Vivi2g04279 215 Gene3D Ribonuclease Inhibitor 25 206 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04279 Vivi-Chr2 156519253 156520947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04279 25 203 Receptor kinase-like Gene Family AT1G34210 61.667 2.51e-70 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04279 - - gmx:100812510 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04279 2 156519253 156520947 Vivi2g04279 2 156519253 156520947 ECH
Vivi2g04279 2 156519253 156520947 Vivi1g03926 1 82821491 82823292 PCT