Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04270 ATGAAGTGTTGGAGATTATCGGCGATTCTGTTTCTAGGGTTTCTGTTGACTAGCATGTCAACGGCGAGATTCGTGGTGGAAAAGAACAGTTTGTCGGTAACTTCGCCGGAGAAAATCAAAGGCAAGCACGATAGTGCGATCGGGAACTTCGGAATACCTCAATACGGTGGTAGCATGGCCGGAAACGTTGTTTACCCTAAGGATAACAGTAAGGGCTGTAAAGACTTCGATTCGTCTTTCAAATCACGTCCTGGTGCTCTTCCGACTATCCTTTTGCTCGATCGTGGAAATTGCTTCTTTGCTTTGAAGGTTTGGAATGCTCAGAAGGCTGGAGCTTCGGCGGTTCTTGTTGCGGATGATATAGAGGAACCTTTGATTACTATGGATACGCCGGAGGAGGATGGATCTTCTGCTAAGTACATTGAGAATATTACGATACCTTCTGCTCTTATTGGAAAGAGTTTTGGTGAGAAGTTGAAGGATGCTATCAGTGGTGGGGATATGGTTAATGTTAATCTTGACTGGAGAGAGGCTGTTCCTCACCCTGATGATCGTGTTGAGTATGAGTTGTGGACCAACAGTAATGATGAGTGTGGAGTTAAGTGTGATATGTTGATTGAATTTTTGAAGGATTTTAAGGGTGCCGCGCAGATTTTAGAGAAAGGGGGTTATACTCAGTTTACACCTCATTATATAACTTGGTACTGTCCTCATGCCTTTACGTTGAGTAAGCAGTGTAAGTCTCAGTGTATAAACCATGGAAGATATTGCGCTCCGGATCCTGAGCAGGACTTCAACTCAGGTTATGATGGGAAAGATGTGGTTGTTGAAAATTTACGGCAGCTATGTGTTTTCAAGGTGGCAAAAGAAACAGAAAAGTCTTGGGTGTGGTGGGACTATGTTACTGATTTTCAAATTAGATGCCCGATGAAGGAGAAAAAGTACAATAAGGAATGTGCAAATTCCGTCATTAAATCTCTAGGTCTTGACACCGCTAAGATTGACAAGTGCATGGGAGATCCTGATGCTGATACTGAAAATTCTATTTTGAAAGAAGAGCAAGATGCCCAAATTGGGAAGGGATCACGTGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAACAGACAATATCGAGGTAAATTGGAGAAAGGGGCCGTTCTAAAGGCTATCTGTTCTGGGTTTGAGGAAACTACTGACCCAGCTGTTTGTTTGAGCAATGATGTGGAAACAAATGAGTGTTTGACAAACAACGGGGGTTGCTGGCAGGATAAAACAGCTAATATCACTGCATGCAAGGATACATTCCGTGGACGAGTATGTGAATGCCCCTTGGTTGATGGTGTGCAATTCAAAGGAGACGGTTATACAACTTGTCAAGTTAGTGGACCTGGGCGTTGCAAGATTAACAATGGAGGCTGTTGGCATGAAGCCCGAAACGGACATGCTTTTTCTGCTTGTTTGGATGATGGGGGAGTTAGATGTCAGTGTCCTGCCGGGTTTAAAGGTGATGGTGTAAAAAATTGTGAAGACATTGATGAATGCAAAGATAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGCAGCTATAACTGCAGTTGTAGTGGAGATCTTCTGTATATCAAAGACCAGGATACATGCATCAGTAAAACTGCCAGTCAGGCAAAATCTACCTGGGCTGCGTTTTGGGTAATTTTGATTGCCCTGGCTATGATTGCTGGAGGAGGATTCCTTGTGTATAAATATAGAATTAGGCAATACATGGATTCTGAAATCAGAGCAATCATGGCACAATATATGCCCTTGGACAGCCAAGAGGTTCCAAATCACGGAAATCATCAAAGAGGTTGA 1869 0.4312 MKCWRLSAILFLGFLLTSMSTARFVVEKNSLSVTSPEKIKGKHDSAIGNFGIPQYGGSMAGNVVYPKDNSKGCKDFDSSFKSRPGALPTILLLDRGNCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDGSSAKYIENITIPSALIGKSFGEKLKDAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLIEFLKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFNSGYDGKDVVVENLRQLCVFKVAKETEKSWVWWDYVTDFQIRCPMKEKKYNKECANSVIKSLGLDTAKIDKCMGDPDADTENSILKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTDPAVCLSNDVETNECLTNNGGCWQDKTANITACKDTFRGRVCECPLVDGVQFKGDGYTTCQVSGPGRCKINNGGCWHEARNGHAFSACLDDGGVRCQCPAGFKGDGVKNCEDIDECKDKKACQCPECSCKNTWGSYNCSCSGDLLYIKDQDTCISKTASQAKSTWAAFWVILIALAMIAGGGFLVYKYRIRQYMDSEIRAIMAQYMPLDSQEVPNHGNHQRG 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04270 622 ProSitePatterns EGF-like domain signature 2. 496 510 IPR000742 -
Vivi2g04270 622 Gene3D Laminin 405 461 - -
Vivi2g04270 622 SMART egfca_6 512 554 IPR001881 GO:0005509
Vivi2g04270 622 CDD PA_VSR 49 173 - -
Vivi2g04270 622 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 6 616 - -
Vivi2g04270 622 CDD EGF_CA 512 540 - -
Vivi2g04270 622 Gene3D - 21 182 - -
Vivi2g04270 622 FunFam Vacuolar-sorting receptor 1 21 182 - -
Vivi2g04270 622 Pfam Complement Clr-like EGF-like 495 515 IPR026823 -
Vivi2g04270 622 ProSitePatterns Calcium-binding EGF-like domain signature. 512 538 IPR018097 GO:0005509
Vivi2g04270 622 FunFam vacuolar-sorting receptor 1 405 461 - -
Vivi2g04270 622 SUPERFAMILY PA domain 85 169 IPR046450 -
Vivi2g04270 622 Gene3D Glutaredoxin 234 395 - -
Vivi2g04270 622 Pfam PA domain 60 159 IPR003137 -
Vivi2g04270 622 Gene3D Laminin 466 515 - -
Vivi2g04270 622 Gene3D Laminin 516 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04270 Vivi-Chr2 156402677 156406775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04270 22 622 Miscellaneous Gene Families AT2G14740 83.802 0.0 1082
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04270 - - tpra:123911000 1219.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04270 2 156402677 156406775 Vivi2g04270 2 156402677 156406775 ECH
Vivi2g04270 2 156402677 156406775 Vivi1g03956 1 83461632 83467823 PCT