Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03956 ATGAAGCTTCAGAGCTCATCTCTGGCTTTATTTTTATATCTAGGGTTTCTCTTACTATCGTTGACGCCGTCGTGCACGGCCAAATTCCTGGTGGAGAAGAACAGCTTGCGTGTGACGTCGCCGGAGTCTATCAAGGGAACATACGATAGTGCGATTGGCAACTTCGGGATTCCTCAATACGGTGGTAGTATGGCCGGGAACGTTGTGTTCCCGAAGGATAATCAGAAAGGGTGTAAGGAGTTTGATGAGTCGGGGATTTCGTTCAAATCGAAAGCTGGTGCTCTTCCAACGTTCGTTTTGCTCGATCGAGGAAGTTGCTTTTTTGCTTTGAAGGTGTGGAATGCTCAGAAGGCTGGAGCTTCTGCTGTTCTTGTTGCGGATGATATTGAGGAGAAACTAATAACCATGGACACTCCTGAAGAGGATGGATCATCTGCAAAATATATAGAGAACATAACAATACCTTCGGCTCTCATAGAGAAAAGTTTTGGTAAGAAATTAAAGAGTGCCATAAGTAATGGGGATATGGTGAATGTAAATCTTGATTGGAGGGAGGCCGTCCCCCACCCAGATGACCGTGTGGAGTATGAGCTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGTGATATGTTGATGGAATTTGTGAAGGATTTTAAGGGTGCGGCACAAATATTGGAGAAAGGTGGCTTTACTCAGTTTACCCCCCATTATATAACTTGGTACTGTCCTCAGGCATTCACGTTAAGTAAGCAGTGCAAGTCTCAGTGCATTAACCATGGAAGATATTGTGCACCAGATCCTGAGCAAGATTTTAGCACTGGTTATGATGGGAAAGACGTGGTTGTTGAAAATTTGAGGCAGTTATGTGTTTACAAGGTGGCAAATGAAACCCAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGGTGCCCAATGAAGGAGAAAAAATACAACAAGAAATGTGCTGATGCTGTCATTGAGTCACTTGGTCTTGATATTAAAAAGATTGAAAAGTGCATGGGAGATCCAGATGCCGATTCTGAGAATACTGTTTTGAAAGAAGAGCAAGATGCCCAAATTGGGAAGGGATCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAACAGCCGTCAGTATCGAGGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTTCAGGTTTTGAAGAAACTACTGAACCAGCTGTTTGTTTGAGCAGTGAGGTGGAGACAAACGAGTGCTTGGATAACAATGGTGGTTGTTGGCGGGATAAAGGAGCTAACATAACTGCATGCAAGGATACTTTCCGCGGGCGAGTATGTGAATGCCCTTTGGTAGATGGTGTGCAGTTCAAAGGAGATGGTTATACGACTTGCGAAGCTAGTGGACCTGGACGGTGCAAGATAAACAATGGAGGTTGTTGGCATGATGCCCGGAACGGACATGCATTTTCTGCTTGTTCGGATAATGGAGTGGTTAAATGCGAGTGTCCTGCAGGGTTTAAAGGTGATGGTGTTAAAGATTGTACAGACATTGATGAATGTAAAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACCTGGGGGAGCTATAACTGCACTTGCAGTGGGGATCTTCTGTATATCAGGGACCATGATACCTGCATAAGTAAAACTTCTAGCCAGGAAGGAAAGTCTGCTTGGGCTGCATTTTTGGTCATTATAACCGGCTTAGTTCTGGCCGCTGCAGGGGCATACCTTGTCTACAAATATAGAATAAGGTCATATATGGATTCTGAAATAAGGGCCATCATGGCACAGTATATGCCCTTGGACAGTCAATCAGAAGTTGTAAATCATGTCAACGATGATAGAGCATGA 1899 0.4392 MKLQSSSLALFLYLGFLLLSLTPSCTAKFLVEKNSLRVTSPESIKGTYDSAIGNFGIPQYGGSMAGNVVFPKDNQKGCKEFDESGISFKSKAGALPTFVLLDRGSCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKSFGKKLKSAISNGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGFTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVVENLRQLCVYKVANETQKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDIKKIEKCMGDPDADSENTVLKEEQDAQIGKGSRGDVTILPTLVVNSRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSEVETNECLDNNGGCWRDKGANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHDARNGHAFSACSDNGVVKCECPAGFKGDGVKDCTDIDECKEKKACQCPECSCKNTWGSYNCTCSGDLLYIRDHDTCISKTSSQEGKSAWAAFLVIITGLVLAAAGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQSEVVNHVNDDRA 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03956 632 CDD PA_VSR 54 181 - -
Vivi1g03956 632 ProSitePatterns Calcium-binding EGF-like domain signature. 520 546 IPR018097 GO:0005509
Vivi1g03956 632 Gene3D Laminin 413 469 - -
Vivi1g03956 632 SUPERFAMILY PA domain 98 174 IPR046450 -
Vivi1g03956 632 FunFam Vacuolar-sorting receptor 1 26 190 - -
Vivi1g03956 632 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 17 621 - -
Vivi1g03956 632 CDD EGF_CA 520 548 - -
Vivi1g03956 632 SMART egfca_6 520 562 IPR001881 GO:0005509
Vivi1g03956 632 Gene3D - 26 190 - -
Vivi1g03956 632 Pfam Complement Clr-like EGF-like 503 523 IPR026823 -
Vivi1g03956 632 Gene3D Laminin 474 554 - -
Vivi1g03956 632 FunFam vacuolar-sorting receptor 1 413 469 - -
Vivi1g03956 632 Pfam PA domain 66 167 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03956 Vivi-Chr1 83461632 83467823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03956 27 632 Miscellaneous Gene Families AT2G14740 84.653 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03956 - - gmx:100803958 1194.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03956 1 83461632 83467823 Vivi1g03956 1 83461632 83467823 ECH
Vivi2g04270 2 156402677 156406775 Vivi1g03956 1 83461632 83467823 PCT